PITA_16 megaCluster: 3 Residual: 0.31

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_16 3 0.31 13 0.002 0.778711 0.054

Members

Displaying 1 - 27 of 27
11787 amyloid beta (A4) precursor protein-binding, family B, member 2

Details for - - amyloid beta (A4) precursor protein-binding, family B, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11787

Tuberculist Genomic Region

12042 B cell leukemia/lymphoma 10

Details for - - B cell leukemia/lymphoma 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12042

Tuberculist Genomic Region

14130 Fc receptor, IgG, low affinity IIb

Details for - - Fc receptor, IgG, low affinity IIb

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14130

Tuberculist Genomic Region

14469 guanylate binding protein 2

Details for - - guanylate binding protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14469

Tuberculist Genomic Region

14630 glutamate-cysteine ligase, modifier subunit

Details for - - glutamate-cysteine ligase, modifier subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14630

Tuberculist Genomic Region

15950 interferon activated gene 203

Details for - - interferon activated gene 203

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15950

Tuberculist Genomic Region

16164 interleukin 13 receptor, alpha 1

Details for RP23-132G2.1 - interleukin 13 receptor, alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16164

Tuberculist Genomic Region

17295 met proto-oncogene

Details for - - met proto-oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17295

Tuberculist Genomic Region

17342 microphthalmia-associated transcription factor

Details for - - microphthalmia-associated transcription factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17342

Tuberculist Genomic Region

18578 phosphodiesterase 4B, cAMP specific

Details for RP23-57D24.1 - phosphodiesterase 4B, cAMP specific

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18578

Tuberculist Genomic Region

19219 prostaglandin E receptor 4 (subtype EP4)

Details for - - prostaglandin E receptor 4 (subtype EP4)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19219

Tuberculist Genomic Region

20910 syntaxin binding protein 1

Details for RP23-17P12.13-002 - syntaxin binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20910

Tuberculist Genomic Region

215772 androglobin

Details for - - androglobin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215772

Tuberculist Genomic Region

218613 mesoderm induction early response 1, family member 3

Details for - - mesoderm induction early response 1, family member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218613

Tuberculist Genomic Region

219140 spermatogenesis associated 13

Details for - - spermatogenesis associated 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 219140

Tuberculist Genomic Region

226562 proline-rich coiled-coil 2C

Details for - - proline-rich coiled-coil 2C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226562

Tuberculist Genomic Region

229900 guanylate binding protein 7

Details for - - guanylate binding protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229900

Tuberculist Genomic Region

230787 thymocyte selection associated family member 2

Details for RP23-442A20.5 - thymocyte selection associated family member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230787

Tuberculist Genomic Region

231549 leucine rich repeat containing 8D

Details for - - leucine rich repeat containing 8D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231549

Tuberculist Genomic Region

383619 absent in melanoma 2

Details for - - absent in melanoma 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 383619

Tuberculist Genomic Region

387160 microRNA 142

Details for - - microRNA 142

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387160

Tuberculist Genomic Region

52392 DNA segment, Chr 1, ERATO Doi 622, expressed

Details for - - DNA segment, Chr 1, ERATO Doi 622, expressed

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52392

Tuberculist Genomic Region

57248 lymphocyte antigen 6 complex, locus I

Details for - - lymphocyte antigen 6 complex, locus I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57248

Tuberculist Genomic Region

65112 prostate transmembrane protein, androgen induced 1

Details for RP23-412O4.1 - prostate transmembrane protein, androgen induced 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65112

Tuberculist Genomic Region

218699 PX domain containing serine/threonine kinase

Details for - - PX domain containing serine/threonine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218699

Tuberculist Genomic Region

234135 Wolf-Hirschhorn syndrome candidate 1-like 1 (human)

Details for - - Wolf-Hirschhorn syndrome candidate 1-like 1 (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234135

Tuberculist Genomic Region

791367 predicted gene 10099

Details for - - predicted gene 10099

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 791367

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_FKLF_Q5_M01837 0.96 0.0000123

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.41 TRAAACAAAAAA NA 750 TNTTTWAAAAAT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.07 CTGCGG NA 1.17 GCCGAACG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.64 TACNTA NA NA 0.77 TAANNTGT NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-144 0.904762 0.0000000835

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-700 0.173913 0.000000236

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