PITA_163 megaCluster: 4 Residual: 0.24

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_163 4 0.24 8 0 0.713013 0.506

Members

Displaying 1 - 35 of 35
100503664 predicted gene 13012

Details for - - predicted gene 13012

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503664

Tuberculist Genomic Region

102857 solute carrier family 6 (neurotransmitter transporter, creatine), member 8

Details for RP23-329M9.4 - solute carrier family 6 (neurotransmitter transporter, creatine), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102857

Tuberculist Genomic Region

16408 integrin alpha L

Details for - - integrin alpha L

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16408

Tuberculist Genomic Region

17931 protein phosphatase 1, regulatory (inhibitor) subunit 12A

Details for - - protein phosphatase 1, regulatory (inhibitor) subunit 12A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17931

Tuberculist Genomic Region

18787 serine (or cysteine) peptidase inhibitor, clade E, member 1

Details for - - serine (or cysteine) peptidase inhibitor, clade E, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18787

Tuberculist Genomic Region

194744 solute carrier family 25, member 43

Details for RP23-100G16.4 - solute carrier family 25, member 43

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 194744

Tuberculist Genomic Region

237928 phosphatase, orphan 1

Details for RP23-151M22.3 - phosphatase, orphan 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237928

Tuberculist Genomic Region

53376 ubiquitin specific peptidase 2

Details for MNCb-0190 - ubiquitin specific peptidase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53376

Tuberculist Genomic Region

53621 CCR4-NOT transcription complex, subunit 4

Details for - - CCR4-NOT transcription complex, subunit 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53621

Tuberculist Genomic Region

69562 cyclin-dependent kinase 13

Details for - - cyclin-dependent kinase 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69562

Tuberculist Genomic Region

70785 DENN/MADD domain containing 1C

Details for - - DENN/MADD domain containing 1C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70785

Tuberculist Genomic Region

11468 actin, gamma 2, smooth muscle, enteric

Details for - - actin, gamma 2, smooth muscle, enteric

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11468

Tuberculist Genomic Region

12986 colony stimulating factor 3 receptor (granulocyte)

Details for RP23-140F18.1 - colony stimulating factor 3 receptor (granulocyte)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12986

Tuberculist Genomic Region

14293 formyl peptide receptor 1

Details for - - formyl peptide receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14293

Tuberculist Genomic Region

16950 lysyl oxidase-like 3

Details for - - lysyl oxidase-like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16950

Tuberculist Genomic Region

171210 acyl-CoA thioesterase 2

Details for - - acyl-CoA thioesterase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 171210

Tuberculist Genomic Region

20017 polymerase (RNA) I polypeptide B

Details for RP24-388N11.1 - polymerase (RNA) I polypeptide B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20017

Tuberculist Genomic Region

20530 solute carrier family 31, member 2

Details for RP23-64F17.2 - solute carrier family 31, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20530

Tuberculist Genomic Region

20725 serine (or cysteine) peptidase inhibitor, clade B, member 8

Details for - - serine (or cysteine) peptidase inhibitor, clade B, member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20725

Tuberculist Genomic Region

21416 transcription factor 7 like 2, T cell specific, HMG box

Details for - - transcription factor 7 like 2, T cell specific, HMG box

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21416

Tuberculist Genomic Region

230770 transmembrane protein 39b

Details for RP23-151A15.10-002 - transmembrane protein 39b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230770

Tuberculist Genomic Region

231633 transmembrane protein 119

Details for - - transmembrane protein 119

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231633

Tuberculist Genomic Region

240690 suppression of tumorigenicity 18

Details for - - suppression of tumorigenicity 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240690

Tuberculist Genomic Region

244895 pseudopodium-enriched atypical kinase 1

Details for - - pseudopodium-enriched atypical kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244895

Tuberculist Genomic Region

269003 Sin3A associated protein

Details for - - Sin3A associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269003

Tuberculist Genomic Region

29817 insulin-like growth factor binding protein 7

Details for - - insulin-like growth factor binding protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29817

Tuberculist Genomic Region

434223 predicted gene 1966

Details for - - predicted gene 1966

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434223

Tuberculist Genomic Region

58194 SH3-domain kinase binding protein 1

Details for RP23-39I7.6 - SH3-domain kinase binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58194

Tuberculist Genomic Region

66043 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit

Details for - - ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66043

Tuberculist Genomic Region

67893 transmembrane protein 86A

Details for - - transmembrane protein 86A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67893

Tuberculist Genomic Region

70093 ubiquitin-conjugating enzyme E2Q (putative) 1

Details for - - ubiquitin-conjugating enzyme E2Q (putative) 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70093

Tuberculist Genomic Region

74152 RIKEN cDNA 1300002K09 gene

Details for RP23-358I3.4 - RIKEN cDNA 1300002K09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74152

Tuberculist Genomic Region

75406 NADH dehydrogenase (ubiquinone) Fe-S protein 7

Details for - - NADH dehydrogenase (ubiquinone) Fe-S protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75406

Tuberculist Genomic Region

76338 RAB2B, member RAS oncogene family

Details for - - RAB2B, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76338

Tuberculist Genomic Region

93736 AF4/FMR2 family, member 4

Details for RP23-226J16.7 - AF4/FMR2 family, member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 93736

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
GMEB2_SAND_DBD_dimer-of-dimers_15_1 0.117647 0.0000329

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.99 GACGCG NA 1.25 GACGCGRC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.57 CGCGTA NA NA 0.63 CNCAACCC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-669f-5p 0.137931 0.0000411

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