PITA_179 megaCluster: 8 Residual: 0.18 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_179	8	0.18	15	0	0.943123	0

Members

Displaying 1 - 37 of 37

23874 phenylalanyl-tRNA synthetase, beta subunit Details for - - phenylalanyl-tRNA synthetase, beta subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 23874 Tuberculist Genomic Region	102093 phosphorylase kinase beta Details for - - phosphorylase kinase beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 102093 Tuberculist Genomic Region
105352 dual specificity phosphatase 22 Details for RP23-217J3.1 - dual specificity phosphatase 22 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105352 Tuberculist Genomic Region	11364 acyl-Coenzyme A dehydrogenase, medium chain Details for - - acyl-Coenzyme A dehydrogenase, medium chain GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11364 Tuberculist Genomic Region
11428 aconitase 1 Details for RP23-9F23.1 - aconitase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11428 Tuberculist Genomic Region	11515 adenylate cyclase 9 Details for - - adenylate cyclase 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11515 Tuberculist Genomic Region
116914 solute carrier family 19 (thiamine transporter), member 2 Details for - - solute carrier family 19 (thiamine transporter), member 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 116914 Tuberculist Genomic Region	11764 adaptor protein complex AP-1, beta 1 subunit Details for RP23-64E17.3 - adaptor protein complex AP-1, beta 1 subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11764 Tuberculist Genomic Region
11881 arylsulfatase B Details for - - arylsulfatase B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11881 Tuberculist Genomic Region	14263 flavin containing monooxygenase 5 Details for - - flavin containing monooxygenase 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14263 Tuberculist Genomic Region
14712 glyceronephosphate O-acyltransferase Details for - - glyceronephosphate O-acyltransferase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14712 Tuberculist Genomic Region	16337 insulin receptor Details for - - insulin receptor GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16337 Tuberculist Genomic Region
16579 kinesin-associated protein 3 Details for - - kinesin-associated protein 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16579 Tuberculist Genomic Region	18749 protein kinase, cAMP dependent, catalytic, beta Details for - - protein kinase, cAMP dependent, catalytic, beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18749 Tuberculist Genomic Region
19691 RecQ protein-like Details for - - RecQ protein-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19691 Tuberculist Genomic Region	210789 TBC1 domain family, member 4 Details for - - TBC1 domain family, member 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 210789 Tuberculist Genomic Region
213056 family with sequence similarity 126, member B Details for - - family with sequence similarity 126, member B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 213056 Tuberculist Genomic Region	215789 phosphatase and actin regulator 2 Details for RP23-104K14.1 - phosphatase and actin regulator 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 215789 Tuberculist Genomic Region
21974 topoisomerase (DNA) II beta Details for - - topoisomerase (DNA) II beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21974 Tuberculist Genomic Region	224694 zinc finger protein 81 Details for - - zinc finger protein 81 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 224694 Tuberculist Genomic Region
227059 solute carrier family 39 (zinc transporter), member 10 Details for - - solute carrier family 39 (zinc transporter), member 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227059 Tuberculist Genomic Region	227154 STE20-related kinase adaptor beta Details for - - STE20-related kinase adaptor beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227154 Tuberculist Genomic Region
319934 SET binding factor 2 Details for - - SET binding factor 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 319934 Tuberculist Genomic Region	54636 WD repeat domain 45 Details for RP23-109E24.3 - WD repeat domain 45 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54636 Tuberculist Genomic Region
67105 tranlocase of inner mitochondrial membrane 21 Details for - - tranlocase of inner mitochondrial membrane 21 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67105 Tuberculist Genomic Region	68058 chromodomain helicase DNA binding protein 1-like Details for - - chromodomain helicase DNA binding protein 1-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68058 Tuberculist Genomic Region
68729 tripartite motif-containing 37 Details for RP23-475B18.1 - tripartite motif-containing 37 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68729 Tuberculist Genomic Region	69634 citrate lyase beta like Details for - - citrate lyase beta like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69634 Tuberculist Genomic Region
71449 methyltransferase like 13 Details for - - methyltransferase like 13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71449 Tuberculist Genomic Region	74164 nuclear transcription factor, X-box binding 1 Details for RP23-28I8.5 - nuclear transcription factor, X-box binding 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74164 Tuberculist Genomic Region
76850 argonaute RISC catalytic subunit 4 Details for RP23-204N19.3 - argonaute RISC catalytic subunit 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76850 Tuberculist Genomic Region	94219 cyclin M2 Details for - - cyclin M2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 94219 Tuberculist Genomic Region
108735 SFT2 domain containing 2 Details for - - SFT2 domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108735 Tuberculist Genomic Region	17692 male-specific lethal 3 homolog (Drosophila) Details for RP23-125I7.1 - male-specific lethal 3 homolog (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17692 Tuberculist Genomic Region
170718 isocitrate dehydrogenase 3 (NAD+) beta Details for RP23-20A6.5 - isocitrate dehydrogenase 3 (NAD+) beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 170718 Tuberculist Genomic Region	170936 zinc finger protein 369 Details for - - zinc finger protein 369 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 170936 Tuberculist Genomic Region
103140 glutathione S-transferase, theta 3 Details for - - glutathione S-transferase, theta 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 103140 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_SP1_Q6_M00196, V_SP1_Q4_01_M00932	1, 1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
540	AAAANAAAGMAA	NA	550	AANAWAAACAR	FOXF2_MA0030.1, FOXO3_MA0157.1, FOXI1_MA0042.1, Foxq1_MA0040.1, FOXD1_MA0031.1, FOXA1_MA0148.1, STAT1_MA0137.1, Foxd3_MA0041.1, V$FOXP3_01_M01599, V$FREAC2_01_M00290, V$FOXO1_01_M00473, V$HFH1_01_M00129, V$HFH8_01_M00294, V$FOXO4_02_M00476, V$FOXP1_01_M00987, V$FOXO4_01_M00472, V$FOXK1_03_M02752, V$FOXO1_02_M00474, V$FOXO3_01_M00477, V$HFH3_01_M00289, V$FOXL1_04_M02753, V$XFD2_01_M00268, V$FREAC7_01_M00293, V$FOXJ2_01_M00422, V$FOXO3_02_M02270, V$FOXO3A_Q1_M01137, V$AIRE_02_M01000, Foxk1.1, Foxl1.1, Foxj3_forkhead_DBD_dimeric_13_1, FOXJ2_forkhead_DBD_dimeric_13_1, Foxj3_forkhead_DBD_monomeric_8_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.4	ACGCCG	NA	1.35	GCGGCNCC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.65	TGCGTC	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-203	0.470588	0.0000692

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