PITA_189 megaCluster: 2 Residual: 0.15

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_189 2 0.15 15 0 0.958442 0

Members

Displaying 1 - 48 of 48
20969 syndecan 1

Details for - - syndecan 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20969

Tuberculist Genomic Region

226089 RIKEN cDNA C030046E11 gene

Details for - - RIKEN cDNA C030046E11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226089

Tuberculist Genomic Region

24127 5'-3' exoribonuclease 1

Details for - - 5'-3' exoribonuclease 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24127

Tuberculist Genomic Region

100382 expressed sequence AW011738

Details for - - expressed sequence AW011738

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100382

Tuberculist Genomic Region

11492 a disintegrin and metallopeptidase domain 19 (meltrin beta)

Details for RP23-29H5.4 - a disintegrin and metallopeptidase domain 19 (meltrin beta)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11492

Tuberculist Genomic Region

11758 peroxiredoxin 6

Details for - - peroxiredoxin 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11758

Tuberculist Genomic Region

12608 CCAAT/enhancer binding protein (C/EBP), beta

Details for RP24-151H6.1 - CCAAT/enhancer binding protein (C/EBP), beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12608

Tuberculist Genomic Region

12769 chemokine (C-C motif) receptor 9

Details for - - chemokine (C-C motif) receptor 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12769

Tuberculist Genomic Region

14058 coagulation factor X

Details for - - coagulation factor X

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14058

Tuberculist Genomic Region

16145 interferon gamma induced GTPase

Details for RP24-499A8.4 - interferon gamma induced GTPase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16145

Tuberculist Genomic Region

17386 matrix metallopeptidase 13

Details for - - matrix metallopeptidase 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17386

Tuberculist Genomic Region

19332 RAB20, member RAS oncogene family

Details for - - RAB20, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19332

Tuberculist Genomic Region

20706 serine (or cysteine) peptidase inhibitor, clade B, member 9b

Details for RP23-391I11.4 - serine (or cysteine) peptidase inhibitor, clade B, member 9b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20706

Tuberculist Genomic Region

214639 RIKEN cDNA 4930486L24 gene

Details for - - RIKEN cDNA 4930486L24 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214639

Tuberculist Genomic Region

217344 rhomboid 5 homolog 2 (Drosophila)

Details for RP23-313J14.3 - rhomboid 5 homolog 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217344

Tuberculist Genomic Region

22021 protein-tyrosine sulfotransferase 1

Details for - - protein-tyrosine sulfotransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22021

Tuberculist Genomic Region

30805 solute carrier family 22 (organic cation transporter), member 4

Details for RP23-354D12.1 - solute carrier family 22 (organic cation transporter), member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30805

Tuberculist Genomic Region

330723 HtrA serine peptidase 4

Details for - - HtrA serine peptidase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 330723

Tuberculist Genomic Region

347722 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1

Details for - - ArfGAP with GTPase domain, ankyrin repeat and PH domain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 347722

Tuberculist Genomic Region

433470 expressed sequence AA467197

Details for RP23-101F14.3 - expressed sequence AA467197

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 433470

Tuberculist Genomic Region

620078 RIKEN cDNA C130026I21 gene

Details for - - RIKEN cDNA C130026I21 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 620078

Tuberculist Genomic Region

628693 predicted gene 6904

Details for mCG_6143 - predicted gene 6904

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 628693

Tuberculist Genomic Region

66665 Myb/SANT-like DNA-binding domain containing 3

Details for RP23-320C6.1 - Myb/SANT-like DNA-binding domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66665

Tuberculist Genomic Region

69028 MIT, microtubule interacting and transport, domain containing 1

Details for - - MIT, microtubule interacting and transport, domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69028

Tuberculist Genomic Region

74123 forkhead box P4

Details for - - forkhead box P4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74123

Tuberculist Genomic Region

11988 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2

Details for - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11988

Tuberculist Genomic Region

12562 cadherin 5

Details for - - cadherin 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12562

Tuberculist Genomic Region

16168 interleukin 15

Details for - - interleukin 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16168

Tuberculist Genomic Region

17295 met proto-oncogene

Details for - - met proto-oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17295

Tuberculist Genomic Region

22271 uridine phosphorylase 1

Details for RP23-104F14.1 - uridine phosphorylase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22271

Tuberculist Genomic Region

229900 guanylate binding protein 7

Details for - - guanylate binding protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229900

Tuberculist Genomic Region

23882 growth arrest and DNA-damage-inducible 45 gamma

Details for - - growth arrest and DNA-damage-inducible 45 gamma

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23882

Tuberculist Genomic Region

55932 guanylate binding protein 3

Details for - - guanylate binding protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 55932

Tuberculist Genomic Region

667034 purine-nucleoside phosphorylase 2

Details for - - purine-nucleoside phosphorylase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 667034

Tuberculist Genomic Region

671535 poly (ADP-ribose) polymerase family, member 10

Details for - - poly (ADP-ribose) polymerase family, member 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 671535

Tuberculist Genomic Region

70617 RIKEN cDNA 5730508B09 gene

Details for - - RIKEN cDNA 5730508B09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70617

Tuberculist Genomic Region

74732 syntaxin 11

Details for - - syntaxin 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74732

Tuberculist Genomic Region

16169 interleukin 15 receptor, alpha chain

Details for RP23-114B13.4 - interleukin 15 receptor, alpha chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16169

Tuberculist Genomic Region

18037 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon

Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18037

Tuberculist Genomic Region

22035 tumor necrosis factor (ligand) superfamily, member 10

Details for - - tumor necrosis factor (ligand) superfamily, member 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22035

Tuberculist Genomic Region

240665 cyclin J

Details for - - cyclin J

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240665

Tuberculist Genomic Region

329795 transmembrane protein 67

Details for RP23-203A12.5 - transmembrane protein 67

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329795

Tuberculist Genomic Region

67245 pellino 1

Details for RP23-93O11.1 - pellino 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67245

Tuberculist Genomic Region

13163 Fas death domain-associated protein

Details for - - Fas death domain-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13163

Tuberculist Genomic Region

14733 glypican 1

Details for - - glypican 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14733

Tuberculist Genomic Region

229898 guanylate binding protein 5

Details for - - guanylate binding protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229898

Tuberculist Genomic Region

74481 basic leucine zipper transcription factor, ATF-like 2

Details for - - basic leucine zipper transcription factor, ATF-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74481

Tuberculist Genomic Region

54199 chemokine (C-C motif) receptor-like 2

Details for - - chemokine (C-C motif) receptor-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54199

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRF9_IRF_full_trimeric_15_1 0.404255 0.00000000000235

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.77 CGTCGC NA 0.88 CCGNNCGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.52 CGGCGG NA NA 0.56 ASGGGCGG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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