PITA_19 megaCluster: 2 Residual: 0.93

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_19 2 0.93 7 0.693 0.707581 0.564

Members

Displaying 1 - 44 of 44
100042807 eukaryotic translation initiation factor 3, subunit J2

Details for - - eukaryotic translation initiation factor 3, subunit J2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100042807

Tuberculist Genomic Region

104923 acireductone dioxygenase 1

Details for - - acireductone dioxygenase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104923

Tuberculist Genomic Region

112407 EGL nine homolog 3 (C. elegans)

Details for - - EGL nine homolog 3 (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 112407

Tuberculist Genomic Region

12703 suppressor of cytokine signaling 1

Details for - - suppressor of cytokine signaling 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12703

Tuberculist Genomic Region

14173 fibroblast growth factor 2

Details for DN-452A22.6 - fibroblast growth factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14173

Tuberculist Genomic Region

16890 lipase, hormone sensitive

Details for mCG_147818 - lipase, hormone sensitive

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16890

Tuberculist Genomic Region

17329 chemokine (C-X-C motif) ligand 9

Details for - - chemokine (C-X-C motif) ligand 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17329

Tuberculist Genomic Region

20266 sodium channel, voltage-gated, type I, beta

Details for - - sodium channel, voltage-gated, type I, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20266

Tuberculist Genomic Region

210582 coenzyme Q10 homolog A (yeast)

Details for - - coenzyme Q10 homolog A (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 210582

Tuberculist Genomic Region

213002 interferon induced transmembrane protein 6

Details for - - interferon induced transmembrane protein 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213002

Tuberculist Genomic Region

21426 transcription factor EC

Details for - - transcription factor EC

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21426

Tuberculist Genomic Region

21847 Kruppel-like factor 10

Details for - - Kruppel-like factor 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21847

Tuberculist Genomic Region

22040 three prime repair exonuclease 1

Details for - - three prime repair exonuclease 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22040

Tuberculist Genomic Region

22339 vascular endothelial growth factor A

Details for - - vascular endothelial growth factor A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22339

Tuberculist Genomic Region

224454 zinc finger, DHHC domain containing 14

Details for - - zinc finger, DHHC domain containing 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224454

Tuberculist Genomic Region

232889 phospholipase A2, group IVC (cytosolic, calcium-independent)

Details for - - phospholipase A2, group IVC (cytosolic, calcium-independent)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 232889

Tuberculist Genomic Region

240672 dual specificity phosphatase 5

Details for - - dual specificity phosphatase 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240672

Tuberculist Genomic Region

26404 mitogen-activated protein kinase kinase kinase 12

Details for - - mitogen-activated protein kinase kinase kinase 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26404

Tuberculist Genomic Region

268930 protein kinase, membrane associated tyrosine/threonine 1

Details for - - protein kinase, membrane associated tyrosine/threonine 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 268930

Tuberculist Genomic Region

29812 N-myc downstream regulated gene 3

Details for RP24-482A24.9 - N-myc downstream regulated gene 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29812

Tuberculist Genomic Region

319487 RIKEN cDNA A230028O05 gene

Details for - - RIKEN cDNA A230028O05 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 319487

Tuberculist Genomic Region

380713 scavenger receptor class F, member 1

Details for RP23-384C18.11-001 - scavenger receptor class F, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 380713

Tuberculist Genomic Region

382406 POC1 centriolar protein homolog B (Chlamydomonas)

Details for - - POC1 centriolar protein homolog B (Chlamydomonas)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382406

Tuberculist Genomic Region

52585 dehydrogenase/reductase (SDR family) member 1

Details for - - dehydrogenase/reductase (SDR family) member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52585

Tuberculist Genomic Region

56209 glycerophosphodiester phosphodiesterase 1

Details for - - glycerophosphodiester phosphodiesterase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56209

Tuberculist Genomic Region

65221 solute carrier family 15, member 3

Details for - - solute carrier family 15, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65221

Tuberculist Genomic Region

67547 solute carrier family 39 (metal ion transporter), member 8

Details for - - solute carrier family 39 (metal ion transporter), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67547

Tuberculist Genomic Region

67865 regulator of G-protein signalling 10

Details for - - regulator of G-protein signalling 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67865

Tuberculist Genomic Region

69104 membrane-associated ring finger (C3HC4) 5

Details for - - membrane-associated ring finger (C3HC4) 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69104

Tuberculist Genomic Region

69116 ubiquitin protein ligase E3 component n-recognin 4

Details for - - ubiquitin protein ligase E3 component n-recognin 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69116

Tuberculist Genomic Region

71566 CXADR-like membrane protein

Details for - - CXADR-like membrane protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71566

Tuberculist Genomic Region

74131 SAM and SH3 domain containing 3

Details for RP23-351G20.2 - SAM and SH3 domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74131

Tuberculist Genomic Region

74136 SEC14-like 1 (S. cerevisiae)

Details for RP23-41E14.7 - SEC14-like 1 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74136

Tuberculist Genomic Region

74152 RIKEN cDNA 1300002K09 gene

Details for RP23-358I3.4 - RIKEN cDNA 1300002K09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74152

Tuberculist Genomic Region

98682 major facilitator superfamily domain containing 6

Details for - - major facilitator superfamily domain containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98682

Tuberculist Genomic Region

14745 lysophosphatidic acid receptor 1

Details for RP23-170A3.2 - lysophosphatidic acid receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14745

Tuberculist Genomic Region

16656 human immunodeficiency virus type I enhancer binding protein 3

Details for RP23-98J9.1 - human immunodeficiency virus type I enhancer binding protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16656

Tuberculist Genomic Region

230738 zinc finger CCCH type containing 12A

Details for RP23-325M14.9 - zinc finger CCCH type containing 12A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230738

Tuberculist Genomic Region

24088 toll-like receptor 2

Details for - - toll-like receptor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24088

Tuberculist Genomic Region

320790 chromodomain helicase DNA binding protein 7

Details for RP23-464N23.1 - chromodomain helicase DNA binding protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320790

Tuberculist Genomic Region

434341 NLR family, CARD domain containing 5

Details for mCG_131283 - NLR family, CARD domain containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434341

Tuberculist Genomic Region

65112 prostate transmembrane protein, androgen induced 1

Details for RP23-412O4.1 - prostate transmembrane protein, androgen induced 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65112

Tuberculist Genomic Region

71409 formin-like 2

Details for RP23-282A22.1 - formin-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71409

Tuberculist Genomic Region

75869 ADP-ribosylation factor-like 5B

Details for - - ADP-ribosylation factor-like 5B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75869

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_LMO2COM_01_M00277 0.674419 0.00000044

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000008 TTTTTYTTCCT NA 0.013 CAGGAGRNKGAG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.02 CGCGGT NA 1.11 CGCGGNAG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.56 TCGCGA NA NA 0.55 NGAACCCG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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