PITA_199 megaCluster: 10 Residual: 0.13

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_199 10 0.13 15 0 0.971768 0

Members

Displaying 1 - 24 of 24
17685 mutS homolog 2 (E. coli)

Details for - - mutS homolog 2 (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17685

Tuberculist Genomic Region

68092 nuclear cap binding protein subunit 2

Details for - - nuclear cap binding protein subunit 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68092

Tuberculist Genomic Region

12036 branched chain aminotransferase 2, mitochondrial

Details for - - branched chain aminotransferase 2, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12036

Tuberculist Genomic Region

17688 mutS homolog 6 (E. coli)

Details for - - mutS homolog 6 (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17688

Tuberculist Genomic Region

18861 postmeiotic segregation increased 2 (S. cerevisiae)

Details for - - postmeiotic segregation increased 2 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18861

Tuberculist Genomic Region

207474 potassium channel tetramerisation domain containing 12b

Details for RP23-106P7.1 - potassium channel tetramerisation domain containing 12b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 207474

Tuberculist Genomic Region

212377 MMS22-like, DNA repair protein

Details for - - MMS22-like, DNA repair protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212377

Tuberculist Genomic Region

22248 unc-119 homolog (C. elegans)

Details for RP23-185A18.16-002 - unc-119 homolog (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22248

Tuberculist Genomic Region

230376 HAUS augmin-like complex, subunit 6

Details for RP23-95O1.3 - HAUS augmin-like complex, subunit 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230376

Tuberculist Genomic Region

235559 topoisomerase (DNA) II binding protein 1

Details for - - topoisomerase (DNA) II binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235559

Tuberculist Genomic Region

236266 Alstrom syndrome 1

Details for - - Alstrom syndrome 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236266

Tuberculist Genomic Region

241627 WD repeat domain 76

Details for RP23-273B19.3 - WD repeat domain 76

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241627

Tuberculist Genomic Region

260409 CDC42 effector protein (Rho GTPase binding) 3

Details for - - CDC42 effector protein (Rho GTPase binding) 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 260409

Tuberculist Genomic Region

50496 E2F transcription factor 6

Details for - - E2F transcription factor 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50496

Tuberculist Genomic Region

50883 checkpoint kinase 2

Details for - - checkpoint kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50883

Tuberculist Genomic Region

52504 centromere protein O

Details for RP23-6C18.1 - centromere protein O

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52504

Tuberculist Genomic Region

52592 breast cancer metastasis-suppressor 1-like

Details for - - breast cancer metastasis-suppressor 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52592

Tuberculist Genomic Region

56196 tyrosyl-DNA phosphodiesterase 2

Details for RP23-92G13.1 - tyrosyl-DNA phosphodiesterase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56196

Tuberculist Genomic Region

56459 SUMO1 activating enzyme subunit 1

Details for - - SUMO1 activating enzyme subunit 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56459

Tuberculist Genomic Region

66634 minichromosome maintenance deficient 8 (S. cerevisiae)

Details for RP23-77H16.3 - minichromosome maintenance deficient 8 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66634

Tuberculist Genomic Region

69724 ribonuclease H2, large subunit

Details for - - ribonuclease H2, large subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69724

Tuberculist Genomic Region

69976 galactokinase 2

Details for RP23-386I21.1 - galactokinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69976

Tuberculist Genomic Region

72357 RIKEN cDNA 2210016L21 gene

Details for - - RIKEN cDNA 2210016L21 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72357

Tuberculist Genomic Region

78658 non-SMC condensin II complex, subunit D3

Details for - - non-SMC condensin II complex, subunit D3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78658

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_E2F_01_M00024 0.208333 0.0000183

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.24 AATAAANNAAA NA 20000 ACTACAATTCCC NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.54 CGAACG NA 1.71 TTCCCGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.65 ATCAGG NA NA 0.72 ACNGAANG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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