PITA_208 megaCluster: 8 Residual: 0.19

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_208	8	0.19	15	0	0.93748	0

Members

Displaying 1 - 41 of 41

TFBS DB TF

TFs	percTargets	pValue
NA

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.00000000000039	RGGGGCGGGGC	SP1_MA0079.2, Klf4_MA0039.2, V$SP1_Q6_M00196, V$SP1_Q6_01_M00931, V$SP4_Q5_M01273, V$SP1_Q4_01_M00932, V$GC_01_M00255, V$SP1_Q2_01_M00933, V$SP1_02_M01303, V$SP1_03_M02281, V$ETF_Q6_M00695, V$SP2_01_M01783, V$MAZR_01_M00491, V$CKROX_Q2_M01175, V$KLF7_03_M02773, V$BCL6B_04_M02844, V$MAZ_Q6_01_M02023, V$ZFP410_04_M02936, V$ZFP281_01_M01597, V$UF1H3BETA_Q6_M01068, V$ZBP89_Q4_M01816, V$GKLF_02_M01588, V$SMAD4_04_M02898, V$SP4_03_M02810, V$MAZ_Q6_M00649, V$SP1_01_M00008, V$E2F3_Q6_M02089, V$ZFP281_04_M02831, V$EGR1_Q6_M01873, V$SP1SP3_Q4_M01219, V$ZNF219_01_M01122, V$KLF15_Q2_M01714, V$ZFP740_03_M02834, V$FKLF_Q5_M01837, V$EGR1_06_M02744, V$GKLF_Q4_M01835, V$SP4_04_M02914, V$KROX_Q6_M00982, Klf7.1, Bcl6b.2, Zfp410.1, Smad3.1, Sp4.1, Zfp281.2, Egr1.1, Zfp740.1, Sp4.2, Ascl2.2, SP1_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1, KLF16_C2H2_DBD_monomeric_11_1, KLF13_C2H2_full_monomeric_18_1, KLF14_C2H2_DBD_monomeric_14_1, SP4_C2H2_full_monomeric_17_1, SP8_C2H2_DBD_monomeric_12_1, ZNF740_C2H2_full_monomeric_10_1, Zfp740_C2H2_DBD_monomeric_10_1	3.9	AAAMAAAAMAAC	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.16	CCGGAG	NA	1.24	CGCTNCGG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.58	GTCGCG	NA	NA	0.67	GCGNGGAT	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

104348 zinc finger protein 120 Details for RP23-11F9.2 - zinc finger protein 120 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 104348 Tuberculist Genomic Region	108853 mitochondrial translational release factor 1-like Details for - - mitochondrial translational release factor 1-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108853 Tuberculist Genomic Region
13177 enoyl-Coenzyme A delta isomerase 1 Details for - - enoyl-Coenzyme A delta isomerase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13177 Tuberculist Genomic Region	68559 p53 and DNA damage regulated 1 Details for RP23-88J10.1 - p53 and DNA damage regulated 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68559 Tuberculist Genomic Region
106821 O-acyl-ADP-ribose deacylase 1 Details for - - O-acyl-ADP-ribose deacylase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 106821 Tuberculist Genomic Region	110854 protein phosphatase 2A activator, regulatory subunit B Details for RP23-399D3.1 - protein phosphatase 2A activator, regulatory subunit B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110854 Tuberculist Genomic Region
12028 BCL2-associated X protein Details for - - BCL2-associated X protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12028 Tuberculist Genomic Region	14467 glioblastoma amplified sequence Details for - - glioblastoma amplified sequence GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14467 Tuberculist Genomic Region
19364 RAD51 homolog D Details for RP23-169P3.1 - RAD51 homolog D GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19364 Tuberculist Genomic Region	20280 sterol carrier protein 2, liver Details for RP23-84A23.1 - sterol carrier protein 2, liver GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20280 Tuberculist Genomic Region
236193 zinc finger protein 709 Details for - - zinc finger protein 709 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 236193 Tuberculist Genomic Region	236794 solute carrier family 9 (sodium/hydrogen exchanger), member 6 Details for RP23-105E2.4 - solute carrier family 9 (sodium/hydrogen exchanger), member 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 236794 Tuberculist Genomic Region
238024 fructosamine 3 kinase related protein Details for RP23-293H17.3 - fructosamine 3 kinase related protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 238024 Tuberculist Genomic Region	23986 enoyl-Coenzyme A delta isomerase 2 Details for - - enoyl-Coenzyme A delta isomerase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 23986 Tuberculist Genomic Region
27643 ubiquitin-like 4 Details for RP23-436K3.13-006 - ubiquitin-like 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27643 Tuberculist Genomic Region	27998 exosome component 5 Details for - - exosome component 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27998 Tuberculist Genomic Region
338354 zinc finger protein 780B Details for - - zinc finger protein 780B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 338354 Tuberculist Genomic Region	52830 proline-rich nuclear receptor coactivator 2 Details for RP23-161N17.3 - proline-rich nuclear receptor coactivator 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52830 Tuberculist Genomic Region
53951 G patch domain containing 11 Details for - - G patch domain containing 11 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 53951 Tuberculist Genomic Region	66653 BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like Details for - - BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66653 Tuberculist Genomic Region
67422 dehydrodolichyl diphosphate synthase Details for RP23-256C7.6 - dehydrodolichyl diphosphate synthase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67422 Tuberculist Genomic Region	72320 RIKEN cDNA 2510003E04 gene Details for - - RIKEN cDNA 2510003E04 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72320 Tuberculist Genomic Region
74142 lon peptidase 1, mitochondrial Details for - - lon peptidase 1, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74142 Tuberculist Genomic Region	78935 serum amyloid A-like 1 Details for - - serum amyloid A-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 78935 Tuberculist Genomic Region
79464 lipoic acid synthetase Details for - - lipoic acid synthetase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 79464 Tuberculist Genomic Region	22247 uridine monophosphate synthetase Details for - - uridine monophosphate synthetase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22247 Tuberculist Genomic Region
66377 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1 Details for - - NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66377 Tuberculist Genomic Region	67959 poly-U binding splicing factor 60 Details for - - poly-U binding splicing factor 60 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67959 Tuberculist Genomic Region
170787 histone deacetylase 10 Details for - - histone deacetylase 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 170787 Tuberculist Genomic Region	234865 nucleoporin 133 Details for - - nucleoporin 133 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 234865 Tuberculist Genomic Region
270198 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 Details for - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 270198 Tuberculist Genomic Region	65099 interleukin-1 receptor-associated kinase 1 binding protein 1 Details for - - interleukin-1 receptor-associated kinase 1 binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 65099 Tuberculist Genomic Region
66822 F-box protein 25 Details for - - F-box protein 25 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66822 Tuberculist Genomic Region	72519 transmembrane protein 55A Details for RP23-379L17.2 - transmembrane protein 55A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72519 Tuberculist Genomic Region
14227 FK506 binding protein 2 Details for - - FK506 binding protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14227 Tuberculist Genomic Region	66559 methionyl aminopeptidase type 1D (mitochondrial) Details for RP23-419H3.1 - methionyl aminopeptidase type 1D (mitochondrial) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66559 Tuberculist Genomic Region
66841 electron transferring flavoprotein, dehydrogenase Details for - - electron transferring flavoprotein, dehydrogenase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66841 Tuberculist Genomic Region	69962 methyltransferase like 18 Details for - - methyltransferase like 18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69962 Tuberculist Genomic Region
74610 ATP-binding cassette, sub-family B (MDR/TAP), member 8 Details for - - ATP-binding cassette, sub-family B (MDR/TAP), member 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74610 Tuberculist Genomic Region	80743 vacuolar protein sorting 16 (yeast) Details for RP23-29K12.8 - vacuolar protein sorting 16 (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80743 Tuberculist Genomic Region
105513 charged multivesicular body protein 7 Details for - - charged multivesicular body protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105513 Tuberculist Genomic Region

Summary

Members

Details for RP23-11F9.2 - zinc finger protein 120

Details for - - mitochondrial translational release factor 1-like

Details for - - enoyl-Coenzyme A delta isomerase 1

Details for RP23-88J10.1 - p53 and DNA damage regulated 1

Details for - - O-acyl-ADP-ribose deacylase 1

Details for RP23-399D3.1 - protein phosphatase 2A activator, regulatory subunit B

Details for - - BCL2-associated X protein

Details for - - glioblastoma amplified sequence

Details for RP23-169P3.1 - RAD51 homolog D

Details for RP23-84A23.1 - sterol carrier protein 2, liver

Details for - - zinc finger protein 709

Details for RP23-105E2.4 - solute carrier family 9 (sodium/hydrogen exchanger), member 6

Details for RP23-293H17.3 - fructosamine 3 kinase related protein

Details for - - enoyl-Coenzyme A delta isomerase 2

Details for RP23-436K3.13-006 - ubiquitin-like 4

Details for - - exosome component 5

Details for - - zinc finger protein 780B

Details for RP23-161N17.3 - proline-rich nuclear receptor coactivator 2

Details for - - G patch domain containing 11

Details for - - BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like

Details for RP23-256C7.6 - dehydrodolichyl diphosphate synthase

Details for - - RIKEN cDNA 2510003E04 gene

Details for - - lon peptidase 1, mitochondrial

Details for - - serum amyloid A-like 1

Details for - - lipoic acid synthetase

Details for - - uridine monophosphate synthetase

Details for - - NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1

Details for - - poly-U binding splicing factor 60

Details for - - histone deacetylase 10

Details for - - nucleoporin 133

Details for - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4

Details for - - interleukin-1 receptor-associated kinase 1 binding protein 1

Details for - - F-box protein 25

Details for RP23-379L17.2 - transmembrane protein 55A

Details for - - FK506 binding protein 2

Details for RP23-419H3.1 - methionyl aminopeptidase type 1D (mitochondrial)

Details for - - electron transferring flavoprotein, dehydrogenase

Details for - - methyltransferase like 18

Details for - - ATP-binding cassette, sub-family B (MDR/TAP), member 8

Details for RP23-29K12.8 - vacuolar protein sorting 16 (yeast)

Details for - - charged multivesicular body protein 7

GO Terms

3p UTR PITA