PITA_210 megaCluster: 8 Residual: 0.22

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_210 8 0.22 15 0 0.906408 0

Members

Displaying 1 - 29 of 29
235339 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)

Details for - - dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235339

Tuberculist Genomic Region

257633 acyl-CoA synthetase family member 3

Details for - - acyl-CoA synthetase family member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 257633

Tuberculist Genomic Region

66911 nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1

Details for - - nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66911

Tuberculist Genomic Region

100036521 predicted gene 16039

Details for - - predicted gene 16039

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100036521

Tuberculist Genomic Region

107029 malic enzyme 2, NAD(+)-dependent, mitochondrial

Details for - - malic enzyme 2, NAD(+)-dependent, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107029

Tuberculist Genomic Region

11907 arginyltransferase 1

Details for - - arginyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11907

Tuberculist Genomic Region

12616 centromere protein B

Details for RP23-32L15.4 - centromere protein B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12616

Tuberculist Genomic Region

17193 methyl-CpG binding domain protein 4

Details for - - methyl-CpG binding domain protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17193

Tuberculist Genomic Region

17252 retinol dehydrogenase 11

Details for - - retinol dehydrogenase 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17252

Tuberculist Genomic Region

18194 NAD(P) dependent steroid dehydrogenase-like

Details for RP23-307G22.4 - NAD(P) dependent steroid dehydrogenase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18194

Tuberculist Genomic Region

18639 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1

Details for RP23-338A17.2 - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18639

Tuberculist Genomic Region

19182 proteasome (prosome, macropain) 26S subunit, ATPase 3

Details for RP23-263H8.1 - proteasome (prosome, macropain) 26S subunit, ATPase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19182

Tuberculist Genomic Region

209416 G patch domain and KOW motifs

Details for RP23-109E24.1 - G patch domain and KOW motifs

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209416

Tuberculist Genomic Region

217333 tripartite motif-containing 47

Details for RP23-42F6.7 - tripartite motif-containing 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217333

Tuberculist Genomic Region

225326 phosphoinositide-3-kinase, class 3

Details for - - phosphoinositide-3-kinase, class 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225326

Tuberculist Genomic Region

22697 zinc finger and SCAN domain containing 21

Details for - - zinc finger and SCAN domain containing 21

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22697

Tuberculist Genomic Region

56424 STIP1 homology and U-Box containing protein 1

Details for - - STIP1 homology and U-Box containing protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56424

Tuberculist Genomic Region

56427 tubulin, delta 1

Details for RP23-467J12.3 - tubulin, delta 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56427

Tuberculist Genomic Region

67773 K(lysine) acetyltransferase 8

Details for - - K(lysine) acetyltransferase 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67773

Tuberculist Genomic Region

67905 protein phosphatase 1M

Details for - - protein phosphatase 1M

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67905

Tuberculist Genomic Region

68201 coiled-coil domain containing 34

Details for RP23-300M9.1 - coiled-coil domain containing 34

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68201

Tuberculist Genomic Region

69790 mediator complex subunit 30

Details for - - mediator complex subunit 30

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69790

Tuberculist Genomic Region

72568 lin-9 homolog (C. elegans)

Details for - - lin-9 homolog (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72568

Tuberculist Genomic Region

73327 protease-associated domain containing 1

Details for - - protease-associated domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73327

Tuberculist Genomic Region

74360 centrosomal protein 57

Details for RP23-133A3.3 - centrosomal protein 57

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74360

Tuberculist Genomic Region

75735 pantothenate kinase 1

Details for - - pantothenate kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75735

Tuberculist Genomic Region

94181 N-acetylneuraminic acid synthase (sialic acid synthase)

Details for RP23-117B19.4 - N-acetylneuraminic acid synthase (sialic acid synthase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94181

Tuberculist Genomic Region

233056 zinc finger protein 790

Details for - - zinc finger protein 790

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233056

Tuberculist Genomic Region

69596 adaptor-related protein 5 complex, sigma 1 subunit

Details for RP23-387C21.2 - adaptor-related protein 5 complex, sigma 1 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69596

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NFIL3_bZIP_DBD_dimeric_12_1 0.142857 0.0000262

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
5.4 TAGNTTTTTYTT NA 1600 CTACATTTCCY NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.25 CCGCTT NA 1.48 AACCGGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.56 CNGTCC NA NA 0.69 AGTGTCCA mmu-mir-3095-3p 8mer

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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