PITA_222 megaCluster: 1 Residual: 0.26

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_222 1 0.26 15 0 0.867057 0

Members

Displaying 1 - 35 of 35
215418 cysteine-serine-rich nuclear protein 1

Details for - - cysteine-serine-rich nuclear protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215418

Tuberculist Genomic Region

236285 LanC lantibiotic synthetase component C-like 3 (bacterial)

Details for RP23-423L11.1 - LanC lantibiotic synthetase component C-like 3 (bacterial)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236285

Tuberculist Genomic Region

246083 defensin beta 13

Details for AL590619.7 - defensin beta 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 246083

Tuberculist Genomic Region

100502790 predicted gene 12239

Details for - - predicted gene 12239

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100502790

Tuberculist Genomic Region

100504160 predicted gene, 20094

Details for - - predicted gene, 20094

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504160

Tuberculist Genomic Region

11998 arginine vasopressin

Details for RP23-100C5.5 - arginine vasopressin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11998

Tuberculist Genomic Region

12914 CREB binding protein

Details for - - CREB binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12914

Tuberculist Genomic Region

14283 fos-like antigen 1

Details for - - fos-like antigen 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14283

Tuberculist Genomic Region

15251 hypoxia inducible factor 1, alpha subunit

Details for - - hypoxia inducible factor 1, alpha subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15251

Tuberculist Genomic Region

18654 placental growth factor

Details for - - placental growth factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18654

Tuberculist Genomic Region

19821 ring finger protein 2

Details for - - ring finger protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19821

Tuberculist Genomic Region

21812 transforming growth factor, beta receptor I

Details for RP23-457P12.1 - transforming growth factor, beta receptor I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21812

Tuberculist Genomic Region

218756 solute carrier family 4, sodium bicarbonate cotransporter, member 7

Details for - - solute carrier family 4, sodium bicarbonate cotransporter, member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218756

Tuberculist Genomic Region

21887 transducin-like enhancer of split 3, homolog of Drosophila E(spl)

Details for - - transducin-like enhancer of split 3, homolog of Drosophila E(spl)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21887

Tuberculist Genomic Region

240396 mex3 homolog C (C. elegans)

Details for - - mex3 homolog C (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240396

Tuberculist Genomic Region

244871 zinc finger CCCH type containing 12C

Details for - - zinc finger CCCH type containing 12C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244871

Tuberculist Genomic Region

338365 solute carrier family 41, member 2

Details for - - solute carrier family 41, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 338365

Tuberculist Genomic Region

338367 myosin ID

Details for - - myosin ID

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 338367

Tuberculist Genomic Region

52712 zinc finger with KRAB and SCAN domains 6

Details for RP23-215H18.1 - zinc finger with KRAB and SCAN domains 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52712

Tuberculist Genomic Region

54604 pecanex homolog (Drosophila)

Details for - - pecanex homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54604

Tuberculist Genomic Region

56644 C-type lectin domain family 7, member a

Details for - - C-type lectin domain family 7, member a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56644

Tuberculist Genomic Region

59043 WD repeat and SOCS box-containing 2

Details for - - WD repeat and SOCS box-containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 59043

Tuberculist Genomic Region

66580 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)

Details for RP23-324H1.4 - ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66580

Tuberculist Genomic Region

666730 zinc finger, ZZ domain containing 3 pseudogene

Details for - - zinc finger, ZZ domain containing 3 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 666730

Tuberculist Genomic Region

666737 RIKEN cDNA 4632427E13 gene

Details for - - RIKEN cDNA 4632427E13 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 666737

Tuberculist Genomic Region

67434 ankyrin repeat domain 33B

Details for - - ankyrin repeat domain 33B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67434

Tuberculist Genomic Region

68142 INO80 homolog (S. cerevisiae)

Details for RP23-46P4.10-001 - INO80 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68142

Tuberculist Genomic Region

69597 AFG3(ATPase family gene 3)-like 2 (yeast)

Details for - - AFG3(ATPase family gene 3)-like 2 (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69597

Tuberculist Genomic Region

71602 myosin IE

Details for - - myosin IE

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71602

Tuberculist Genomic Region

74007 BTB (POZ) domain containing 11

Details for - - BTB (POZ) domain containing 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74007

Tuberculist Genomic Region

74198 deltex 2 homolog (Drosophila)

Details for - - deltex 2 homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74198

Tuberculist Genomic Region

100504453 predicted gene, 20236

Details for - - predicted gene, 20236

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504453

Tuberculist Genomic Region

11787 amyloid beta (A4) precursor protein-binding, family B, member 2

Details for - - amyloid beta (A4) precursor protein-binding, family B, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11787

Tuberculist Genomic Region

57783 TNFAIP3 interacting protein 1

Details for - - TNFAIP3 interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57783

Tuberculist Genomic Region

226562 proline-rich coiled-coil 2C

Details for - - proline-rich coiled-coil 2C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226562

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
GMEB2_SAND_DBD_dimer-of-dimers_15_1 0.166667 0.000000784

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.28 CTCGGC NA 1.31 TCGCCCGN NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.7 ATGGTNNC NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-1188 0.826087 0.0000014

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-1896 0.625 0.0000078

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