PITA_44 megaCluster: 4 Residual: 0.30

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_44 4 0.30 15 0 0.851255 0

Members

Displaying 1 - 31 of 31
100494 zinc finger, AN1-type domain 2A

Details for - - zinc finger, AN1-type domain 2A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100494

Tuberculist Genomic Region

102060 growth arrest and DNA-damage-inducible, gamma interacting protein 1

Details for - - growth arrest and DNA-damage-inducible, gamma interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102060

Tuberculist Genomic Region

12266 complement component 3

Details for - - complement component 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12266

Tuberculist Genomic Region

13136 CD55 antigen

Details for AC111067.1 - CD55 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13136

Tuberculist Genomic Region

14293 formyl peptide receptor 1

Details for - - formyl peptide receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14293

Tuberculist Genomic Region

14705 Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)

Details for MNCb-2630 - Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14705

Tuberculist Genomic Region

15040 histocompatibility 2, T region locus 23

Details for - - histocompatibility 2, T region locus 23

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15040

Tuberculist Genomic Region

16633 killer cell lectin-like receptor, subfamily A, member 2

Details for - - killer cell lectin-like receptor, subfamily A, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16633

Tuberculist Genomic Region

20592 lysine (K)-specific demethylase 5D

Details for - - lysine (K)-specific demethylase 5D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20592

Tuberculist Genomic Region

20612 sialic acid binding Ig-like lectin 1, sialoadhesin

Details for RP23-228H14.5 - sialic acid binding Ig-like lectin 1, sialoadhesin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20612

Tuberculist Genomic Region

223453 death-associated protein

Details for - - death-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223453

Tuberculist Genomic Region

268490 LSM12 homolog (S. cerevisiae)

Details for RP23-167N11.2 - LSM12 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 268490

Tuberculist Genomic Region

26908 eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked

Details for - - eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26908

Tuberculist Genomic Region

28075 desumoylating isopeptidase 1

Details for - - desumoylating isopeptidase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 28075

Tuberculist Genomic Region

407243 transmembrane protein 189

Details for RP23-118A2.8 - transmembrane protein 189

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 407243

Tuberculist Genomic Region

56212 ras homolog gene family, member G

Details for - - ras homolog gene family, member G

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56212

Tuberculist Genomic Region

66632 diphthamine biosynthesis 6

Details for RP23-177D21.1 - diphthamine biosynthesis 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66632

Tuberculist Genomic Region

67702 ring finger protein 149

Details for - - ring finger protein 149

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67702

Tuberculist Genomic Region

69156 catechol-O-methyltransferase domain containing 1

Details for - - catechol-O-methyltransferase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69156

Tuberculist Genomic Region

75406 NADH dehydrogenase (ubiquinone) Fe-S protein 7

Details for - - NADH dehydrogenase (ubiquinone) Fe-S protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75406

Tuberculist Genomic Region

11816 apolipoprotein E

Details for - - apolipoprotein E

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11816

Tuberculist Genomic Region

12111 biglycan

Details for RP23-95K12.7 - biglycan

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12111

Tuberculist Genomic Region

140780 BMP2 inducible kinase

Details for - - BMP2 inducible kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140780

Tuberculist Genomic Region

16007 cysteine rich protein 61

Details for - - cysteine rich protein 61

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16007

Tuberculist Genomic Region

20841 zinc finger protein 143

Details for - - zinc finger protein 143

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20841

Tuberculist Genomic Region

217119 xylosyltransferase II

Details for RP23-290B5.5 - xylosyltransferase II

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217119

Tuberculist Genomic Region

234779 phospholipase C, gamma 2

Details for - - phospholipase C, gamma 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234779

Tuberculist Genomic Region

67739 solute carrier family 48 (heme transporter), member 1

Details for - - solute carrier family 48 (heme transporter), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67739

Tuberculist Genomic Region

75731 idnK gluconokinase homolog (E. coli)

Details for - - idnK gluconokinase homolog (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75731

Tuberculist Genomic Region

99899 interferon-induced protein 44

Details for - - interferon-induced protein 44

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99899

Tuberculist Genomic Region

14268 fibronectin 1

Details for - - fibronectin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14268

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_CEBP_01_M00159 0.290323 0.0000226

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00069 ACTTTNTTTWYT NA 94 TTTKCTTTTTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.96 GGCGCT NA 1.03 CGYCGCGT Max.2, Sp100.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.53 CCCNAC NA NA 0.57 GGTNGCCC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-1966 0.428571 0.0000696

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