PITA_47 megaCluster: 2 Residual: 0.15 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_47	2	0.15	15	0	0.957856	0

Members

Displaying 1 - 31 of 31

104015 synaptojanin 1 Details for - - synaptojanin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 104015 Tuberculist Genomic Region	107607 nucleotide-binding oligomerization domain containing 1 Details for - - nucleotide-binding oligomerization domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107607 Tuberculist Genomic Region
110521 human immunodeficiency virus type I enhancer binding protein 1 Details for - - human immunodeficiency virus type I enhancer binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110521 Tuberculist Genomic Region	12484 CD24a antigen Details for - - CD24a antigen GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12484 Tuberculist Genomic Region
15558 5-hydroxytryptamine (serotonin) receptor 2A Details for - - 5-hydroxytryptamine (serotonin) receptor 2A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15558 Tuberculist Genomic Region	18037 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18037 Tuberculist Genomic Region
21417 zinc finger E-box binding homeobox 1 Details for - - zinc finger E-box binding homeobox 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21417 Tuberculist Genomic Region	225594 predicted gene 4841 Details for - - predicted gene 4841 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 225594 Tuberculist Genomic Region
22782 solute carrier family 30 (zinc transporter), member 1 Details for - - solute carrier family 30 (zinc transporter), member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22782 Tuberculist Genomic Region	229003 helicase with zinc finger 2, transcriptional coactivator Details for RP23-401M24.3 - helicase with zinc finger 2, transcriptional coactivator GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229003 Tuberculist Genomic Region
27215 5-azacytidine induced gene 2 Details for - - 5-azacytidine induced gene 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27215 Tuberculist Genomic Region	381287 RIKEN cDNA A530032D15Rik gene Details for - - RIKEN cDNA A530032D15Rik gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 381287 Tuberculist Genomic Region
434341 NLR family, CARD domain containing 5 Details for mCG_131283 - NLR family, CARD domain containing 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 434341 Tuberculist Genomic Region	52822 RUN and FYVE domain containing 3 Details for - - RUN and FYVE domain containing 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52822 Tuberculist Genomic Region
54483 Mediterranean fever Details for - - Mediterranean fever GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54483 Tuberculist Genomic Region	620078 RIKEN cDNA C130026I21 gene Details for - - RIKEN cDNA C130026I21 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 620078 Tuberculist Genomic Region
68255 transmembrane protein 86B Details for - - transmembrane protein 86B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68255 Tuberculist Genomic Region	71371 AT rich interactive domain 5B (MRF1-like) Details for - - AT rich interactive domain 5B (MRF1-like) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71371 Tuberculist Genomic Region
71701 polyribonucleotide nucleotidyltransferase 1 Details for RP23-313I4.2 - polyribonucleotide nucleotidyltransferase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71701 Tuberculist Genomic Region	71956 ring finger protein 135 Details for RP23-345E8.1 - ring finger protein 135 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71956 Tuberculist Genomic Region
75234 ring finger protein 19B Details for RP23-284L6.1 - ring finger protein 19B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75234 Tuberculist Genomic Region	79233 zinc finger protein 319 Details for - - zinc finger protein 319 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 79233 Tuberculist Genomic Region
98402 SH3-domain binding protein 4 Details for - - SH3-domain binding protein 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 98402 Tuberculist Genomic Region	99382 ankyrin repeat and BTB (POZ) domain containing 2 Details for RP23-338B23.1 - ankyrin repeat and BTB (POZ) domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 99382 Tuberculist Genomic Region
192198 leucine rich repeat containing 4 Details for - - leucine rich repeat containing 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 192198 Tuberculist Genomic Region	319487 RIKEN cDNA A230028O05 gene Details for - - RIKEN cDNA A230028O05 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 319487 Tuberculist Genomic Region
14733 glypican 1 Details for - - glypican 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14733 Tuberculist Genomic Region	245126 T cell-interacting, activating receptor on myeloid cells 1 Details for - - T cell-interacting, activating receptor on myeloid cells 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 245126 Tuberculist Genomic Region
64292 prostaglandin E synthase Details for RP23-221O14.6 - prostaglandin E synthase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 64292 Tuberculist Genomic Region	14745 lysophosphatidic acid receptor 1 Details for RP23-170A3.2 - lysophosphatidic acid receptor 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14745 Tuberculist Genomic Region
230779 serine incorporator 2 Details for RP23-12J1.7 - serine incorporator 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230779 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_ISGF3G_03_M02771	0.233333	0.00000308

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
1.8	WTTCTTAAAAAA	NA	3.9	GNGGGGCGGGGC	Klf4_MA0039.2, SP1_MA0079.2, SP1_MA0079.1, V$SP4_Q5_M01273, V$SP1_Q6_M00196, V$SP1_Q6_01_M00931, V$SP1_02_M01303, V$SP1_Q4_01_M00932, V$SP1_Q2_01_M00933, V$SP2_01_M01783, V$GKLF_02_M01588, V$GC_01_M00255, V$KLF7_03_M02773, V$ZFP281_01_M01597, V$CKROX_Q2_M01175, V$SP1_03_M02281, V$MAZR_01_M00491, V$UF1H3BETA_Q6_M01068, V$SMAD4_04_M02898, V$SP4_03_M02810, V$E2F3_Q6_M02089, V$SP1_01_M00008, V$MAZ_Q6_M00649, V$ZBP89_Q4_M01816, V$ETF_Q6_M00695, V$ZFP281_04_M02831, V$BCL6B_04_M02844, V$CACD_01_M01113, V$ZNF219_01_M01122, V$SP1SP3_Q4_M01219, V$KLF15_Q2_M01714, V$ZFP410_04_M02936, V$EGR1_Q6_M01873, V$KROX_Q6_M00982, V$MAZ_Q6_01_M02023, V$SP4_04_M02914, V$CACBINDINGPROTEIN_Q6_M00720, V$ZFP740_03_M02834, V$EGR1_06_M02744, V$WT1_Q6_01_M02036, V$FKLF_Q5_M01837, Klf7.1, Smad3.1, Sp4.1, Zfp281.2, Bcl6b.2, Zfp410.1, Egr1.1, Sp4.2, Zfp740.1, SP4_C2H2_full_monomeric_17_1, KLF16_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, SP1_C2H2_DBD_monomeric_11_1, KLF13_C2H2_full_monomeric_18_1, SP8_C2H2_DBD_monomeric_12_1, SP3_C2H2_DBD_monomeric_11_1, ZNF740_C2H2_full_monomeric_10_1, Klf12_C2H2_DBD_monomeric_15_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
0.89	TCGCCG	NA	1.13	NCGCGCCG	V$E2F_Q2_M00803

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.67	TGGTCNKG	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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