PITA_57 megaCluster: 8 Residual: 0.27

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_57 8 0.27 14 0 0.84373 0

Members

Displaying 1 - 29 of 29
105377 ankyrin repeat domain 32

Details for - - ankyrin repeat domain 32

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105377

Tuberculist Genomic Region

12850 demethyl-Q 7

Details for - - demethyl-Q 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12850

Tuberculist Genomic Region

14957 histone cluster 1, H1d

Details for mCG_50184 - histone cluster 1, H1d

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14957

Tuberculist Genomic Region

216443 methionine-tRNA synthetase

Details for - - methionine-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216443

Tuberculist Genomic Region

21749 telomeric repeat binding factor 1

Details for - - telomeric repeat binding factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21749

Tuberculist Genomic Region

233876 HIRA interacting protein 3

Details for - - HIRA interacting protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233876

Tuberculist Genomic Region

233987 zinc finger protein 958

Details for - - zinc finger protein 958

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233987

Tuberculist Genomic Region

236539 3-phosphoglycerate dehydrogenase

Details for - - 3-phosphoglycerate dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236539

Tuberculist Genomic Region

236930 excision repair cross-complementing rodent repair deficiency complementation group 6 like

Details for RP23-448C18.8 - excision repair cross-complementing rodent repair deficiency complementation group 6 like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236930

Tuberculist Genomic Region

240068 zinc finger protein 563

Details for RP24-63E7.2 - zinc finger protein 563

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240068

Tuberculist Genomic Region

26886 centromere protein H

Details for - - centromere protein H

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26886

Tuberculist Genomic Region

56335 methyltransferase like 3

Details for - - methyltransferase like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56335

Tuberculist Genomic Region

56350 ADP-ribosylation factor-like 3

Details for - - ADP-ribosylation factor-like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56350

Tuberculist Genomic Region

66401 nudix (nucleoside diphosphate linked moiety X)-type motif 2

Details for RP23-100C7.1 - nudix (nucleoside diphosphate linked moiety X)-type motif 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66401

Tuberculist Genomic Region

67099 methyltransferase like 21A

Details for - - methyltransferase like 21A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67099

Tuberculist Genomic Region

67121 microtubule associated serine/threonine kinase-like

Details for - - microtubule associated serine/threonine kinase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67121

Tuberculist Genomic Region

67219 mediator complex subunit 18

Details for RP23-63D8.2 - mediator complex subunit 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67219

Tuberculist Genomic Region

67492 zinc finger, AN1-type domain 4

Details for - - zinc finger, AN1-type domain 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67492

Tuberculist Genomic Region

67623 transmembrane 7 superfamily member 3

Details for RP23-158O11.3 - transmembrane 7 superfamily member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67623

Tuberculist Genomic Region

67826 synaptosomal-associated protein, 47

Details for RP23-378H5.4 - synaptosomal-associated protein, 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67826

Tuberculist Genomic Region

72421 tetratricopeptide repeat domain 30B

Details for RP23-159H12.4 - tetratricopeptide repeat domain 30B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72421

Tuberculist Genomic Region

77022 NDC80 homolog, kinetochore complex component pseudogene

Details for - - NDC80 homolog, kinetochore complex component pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77022

Tuberculist Genomic Region

17997 neural precursor cell expressed, developmentally down-regulated gene 1

Details for - - neural precursor cell expressed, developmentally down-regulated gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17997

Tuberculist Genomic Region

19655 RNA binding motif protein, X chromosome

Details for RP23-372E6.2 - RNA binding motif protein, X chromosome

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19655

Tuberculist Genomic Region

26951 zw10 kinetochore protein

Details for - - zw10 kinetochore protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26951

Tuberculist Genomic Region

271697 cyclin-dependent kinase 15

Details for - - cyclin-dependent kinase 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 271697

Tuberculist Genomic Region

56462 mitochondrial carrier homolog 1 (C. elegans)

Details for - - mitochondrial carrier homolog 1 (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56462

Tuberculist Genomic Region

68098 ring finger and CHY zinc finger domain containing 1

Details for - - ring finger and CHY zinc finger domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68098

Tuberculist Genomic Region

69683 ER membrane protein complex subunit 10

Details for - - ER membrane protein complex subunit 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69683

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0005 TTTTNTTNTTCT NA 230 AAGTTAAANWTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.28 CGTTCG NA 1.33 CGTTCGGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.62 CGTCGA NA NA 0.68 CTTAGNNT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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