PITA_6 megaCluster: 11 Residual: 0.17

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_6 11 0.17 10 0 0.798444 0.009

Members

Displaying 1 - 28 of 28
103140 glutathione S-transferase, theta 3

Details for - - glutathione S-transferase, theta 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103140

Tuberculist Genomic Region

104725 serine palmitoyltransferase, small subunit A

Details for - - serine palmitoyltransferase, small subunit A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104725

Tuberculist Genomic Region

105988 extra spindle pole bodies 1 (S. cerevisiae)

Details for - - extra spindle pole bodies 1 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105988

Tuberculist Genomic Region

12235 budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)

Details for RP23-189N15.7 - budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12235

Tuberculist Genomic Region

12972 crystallin, zeta

Details for - - crystallin, zeta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12972

Tuberculist Genomic Region

14235 forkhead box M1

Details for - - forkhead box M1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14235

Tuberculist Genomic Region

18973 polymerase (DNA directed), epsilon

Details for - - polymerase (DNA directed), epsilon

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18973

Tuberculist Genomic Region

20460 Scl/Tal1 interrupting locus

Details for RP23-295C20.5 - Scl/Tal1 interrupting locus

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20460

Tuberculist Genomic Region

217216 cDNA sequence BC030867

Details for RP23-461C4.3 - cDNA sequence BC030867

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217216

Tuberculist Genomic Region

229499 Fc receptor-like 1

Details for - - Fc receptor-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229499

Tuberculist Genomic Region

233406 protein regulator of cytokinesis 1

Details for - - protein regulator of cytokinesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233406

Tuberculist Genomic Region

27027 tetraspanin 32

Details for - - tetraspanin 32

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27027

Tuberculist Genomic Region

27221 chromatin assembly factor 1, subunit A (p150)

Details for - - chromatin assembly factor 1, subunit A (p150)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27221

Tuberculist Genomic Region

27280 pleckstrin homology-like domain, family A, member 3

Details for - - pleckstrin homology-like domain, family A, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27280

Tuberculist Genomic Region

27405 ATP-binding cassette, sub-family G (WHITE), member 3

Details for - - ATP-binding cassette, sub-family G (WHITE), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27405

Tuberculist Genomic Region

29807 thiamine pyrophosphokinase

Details for - - thiamine pyrophosphokinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29807

Tuberculist Genomic Region

329727 DENN/MADD domain containing 2C

Details for - - DENN/MADD domain containing 2C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329727

Tuberculist Genomic Region

56520 NME/NM23 nucleoside diphosphate kinase 4

Details for - - NME/NM23 nucleoside diphosphate kinase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56520

Tuberculist Genomic Region

56541 hyaluronic acid binding protein 4

Details for - - hyaluronic acid binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56541

Tuberculist Genomic Region

58801 phorbol-12-myristate-13-acetate-induced protein 1

Details for - - phorbol-12-myristate-13-acetate-induced protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58801

Tuberculist Genomic Region

666938 BEN domain containing 4

Details for - - BEN domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 666938

Tuberculist Genomic Region

66868 major facilitator superfamily domain containing 1

Details for - - major facilitator superfamily domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66868

Tuberculist Genomic Region

70472 ATPase family, AAA domain containing 2

Details for - - ATPase family, AAA domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70472

Tuberculist Genomic Region

72479 hydroxysteroid dehydrogenase like 2

Details for RP23-6E12.1 - hydroxysteroid dehydrogenase like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72479

Tuberculist Genomic Region

75216 centrosomal protein 128

Details for - - centrosomal protein 128

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75216

Tuberculist Genomic Region

76464 cancer susceptibility candidate 5

Details for RP23-15I21.2 - cancer susceptibility candidate 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76464

Tuberculist Genomic Region

76915 meiotic nuclear divisions 1 homolog (S. cerevisiae)

Details for - - meiotic nuclear divisions 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76915

Tuberculist Genomic Region

20419 Shc SH2-domain binding protein 1

Details for - - Shc SH2-domain binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20419

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
FOXF2_MA0030.1 0.178571 0.0000178

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000000000026 AAANAAAANAAA NA 22000 YTTCCTTTCTG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.08 GCGTCG NA 1.5 GCGCGNCG Zfp161.2, Zfp161.1, E2F3.1, E2F2.1, Smad3.1, Sp4.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.45 GNGTAT NA NA 0.71 GCCTGCTN NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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