PITA_62 megaCluster: 8 Residual: 0.20

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_62 8 0.20 15 0 0.930129 0

Members

Displaying 1 - 46 of 46
100504653 RIKEN cDNA 4930555A03 gene

Details for - - RIKEN cDNA 4930555A03 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504653

Tuberculist Genomic Region

102093 phosphorylase kinase beta

Details for - - phosphorylase kinase beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102093

Tuberculist Genomic Region

107047 proteasome (prosome, macropain) assembly chaperone 2

Details for - - proteasome (prosome, macropain) assembly chaperone 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107047

Tuberculist Genomic Region

108902 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1

Details for - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108902

Tuberculist Genomic Region

11515 adenylate cyclase 9

Details for - - adenylate cyclase 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11515

Tuberculist Genomic Region

116914 solute carrier family 19 (thiamine transporter), member 2

Details for - - solute carrier family 19 (thiamine transporter), member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 116914

Tuberculist Genomic Region

11727 angiogenin, ribonuclease, RNase A family, 5

Details for - - angiogenin, ribonuclease, RNase A family, 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11727

Tuberculist Genomic Region

11992 AU RNA binding protein/enoyl-coenzyme A hydratase

Details for - - AU RNA binding protein/enoyl-coenzyme A hydratase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11992

Tuberculist Genomic Region

12908 carnitine acetyltransferase

Details for RP23-395P6.8 - carnitine acetyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12908

Tuberculist Genomic Region

14768 LanC (bacterial lantibiotic synthetase component C)-like 1

Details for AC133187.1 - LanC (bacterial lantibiotic synthetase component C)-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14768

Tuberculist Genomic Region

16337 insulin receptor

Details for - - insulin receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16337

Tuberculist Genomic Region

16403 integrin alpha 6

Details for RP23-5K9.4 - integrin alpha 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16403

Tuberculist Genomic Region

16579 kinesin-associated protein 3

Details for - - kinesin-associated protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16579

Tuberculist Genomic Region

170707 ubiquitin specific peptidase 48

Details for RP23-277N22.2 - ubiquitin specific peptidase 48

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170707

Tuberculist Genomic Region

215789 phosphatase and actin regulator 2

Details for RP23-104K14.1 - phosphatase and actin regulator 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215789

Tuberculist Genomic Region

232334 vestigial like 4 (Drosophila)

Details for - - vestigial like 4 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 232334

Tuberculist Genomic Region

241066 calcium response factor

Details for - - calcium response factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241066

Tuberculist Genomic Region

329416 nitric oxide synthase trafficker

Details for RP23-431D4.2 - nitric oxide synthase trafficker

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329416

Tuberculist Genomic Region

56454 aldehyde dehydrogenase 18 family, member A1

Details for - - aldehyde dehydrogenase 18 family, member A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56454

Tuberculist Genomic Region

64099 parvin, gamma

Details for RP23-23A6.2 - parvin, gamma

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64099

Tuberculist Genomic Region

67168 lysophosphatidic acid receptor 6

Details for - - lysophosphatidic acid receptor 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67168

Tuberculist Genomic Region

67442 retinol saturase (all trans retinol 13,14 reductase)

Details for - - retinol saturase (all trans retinol 13,14 reductase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67442

Tuberculist Genomic Region

67943 mesoderm development candidate 2

Details for - - mesoderm development candidate 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67943

Tuberculist Genomic Region

68055 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S

Details for - - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68055

Tuberculist Genomic Region

68318 anterior pharynx defective 1c homolog (C. elegans)

Details for - - anterior pharynx defective 1c homolog (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68318

Tuberculist Genomic Region

69634 citrate lyase beta like

Details for - - citrate lyase beta like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69634

Tuberculist Genomic Region

70223 asparaginyl-tRNA synthetase

Details for - - asparaginyl-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70223

Tuberculist Genomic Region

70681 family with sequence similarity 175, member A

Details for - - family with sequence similarity 175, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70681

Tuberculist Genomic Region

76429 phospholysine phosphohistidine inorganic pyrophosphate phosphatase

Details for - - phospholysine phosphohistidine inorganic pyrophosphate phosphatase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76429

Tuberculist Genomic Region

103784 WD repeat domain 92

Details for RP23-32H19.3 - WD repeat domain 92

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103784

Tuberculist Genomic Region

11690 arachidonate 5-lipoxygenase activating protein

Details for - - arachidonate 5-lipoxygenase activating protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11690

Tuberculist Genomic Region

29807 thiamine pyrophosphokinase

Details for - - thiamine pyrophosphokinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29807

Tuberculist Genomic Region

66375 dehydrogenase/reductase (SDR family) member 7

Details for - - dehydrogenase/reductase (SDR family) member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66375

Tuberculist Genomic Region

66446 exosome component 7

Details for - - exosome component 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66446

Tuberculist Genomic Region

67486 polymerase (RNA) III (DNA directed) polypeptide G

Details for - - polymerase (RNA) III (DNA directed) polypeptide G

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67486

Tuberculist Genomic Region

69786 Tp53rk binding protein

Details for - - Tp53rk binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69786

Tuberculist Genomic Region

105352 dual specificity phosphatase 22

Details for RP23-217J3.1 - dual specificity phosphatase 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105352

Tuberculist Genomic Region

170936 zinc finger protein 369

Details for - - zinc finger protein 369

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170936

Tuberculist Genomic Region

18749 protein kinase, cAMP dependent, catalytic, beta

Details for - - protein kinase, cAMP dependent, catalytic, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18749

Tuberculist Genomic Region

20503 solute carrier family 16 (monocarboxylic acid transporters), member 7

Details for - - solute carrier family 16 (monocarboxylic acid transporters), member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20503

Tuberculist Genomic Region

227154 STE20-related kinase adaptor beta

Details for - - STE20-related kinase adaptor beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227154

Tuberculist Genomic Region

329727 DENN/MADD domain containing 2C

Details for - - DENN/MADD domain containing 2C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329727

Tuberculist Genomic Region

66257 nicolin 1

Details for - - nicolin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66257

Tuberculist Genomic Region

103140 glutathione S-transferase, theta 3

Details for - - glutathione S-transferase, theta 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103140

Tuberculist Genomic Region

11764 adaptor protein complex AP-1, beta 1 subunit

Details for RP23-64E17.3 - adaptor protein complex AP-1, beta 1 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11764

Tuberculist Genomic Region

12846 catechol-O-methyltransferase

Details for - - catechol-O-methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12846

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_SP1_Q4_01_M00932 0.977778 0.0000537

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000014 AAAAAGAAAAA NA 23 CTGGGANWTGTA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.11 CGCCGA NA 1.15 GCTCGNCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.4 TCGCCG NA NA 0.56 NGCCGTAT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-3079-3p 0.365854 0.0000603

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