PITA_64 megaCluster: 3 Residual: 0.38

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_64 3 0.38 15 0 0.771829 0.071

Members

Displaying 1 - 25 of 25
100124347 T cell receptor alpha joining 41

Details for - - T cell receptor alpha joining 41

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100124347

Tuberculist Genomic Region

100216537 small nucleolar RNA, C/D box 104

Details for - - small nucleolar RNA, C/D box 104

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100216537

Tuberculist Genomic Region

100502619 expressed sequence AW046200

Details for - - expressed sequence AW046200

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100502619

Tuberculist Genomic Region

100503054 predicted gene, 19528

Details for - - predicted gene, 19528

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503054

Tuberculist Genomic Region

100504727 insulin-like growth factor 1, intronic transcript

Details for - - insulin-like growth factor 1, intronic transcript

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503785

Tuberculist Genomic Region

114672 predicted gene, 20172

Details for - - predicted gene, 20172

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504323

Tuberculist Genomic Region

16634 expressed sequence BE692007

Details for - - expressed sequence BE692007

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504727

Tuberculist Genomic Region

232065 RIKEN cDNA 1700007E05 gene

Details for - - RIKEN cDNA 1700007E05 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114672

Tuberculist Genomic Region

258350 killer cell lectin-like receptor, subfamily A, member 3

Details for - - killer cell lectin-like receptor, subfamily A, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16634

Tuberculist Genomic Region

258952 immunoglobulin kappa variable 8-19

Details for - - immunoglobulin kappa variable 8-19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 232065

Tuberculist Genomic Region

723902 olfactory receptor 706

Details for - - olfactory receptor 706

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258350

Tuberculist Genomic Region

724112 olfactory receptor 341

Details for RP23-311F6.3 - olfactory receptor 341

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258952

Tuberculist Genomic Region

77975 microRNA 7-1

Details for - - microRNA 7-1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723902

Tuberculist Genomic Region

100504117 cDNA sequence BC106175

Details for - - cDNA sequence BC106175

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 724112

Tuberculist Genomic Region

12488 transmembrane protein 50B

Details for - - transmembrane protein 50B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77975

Tuberculist Genomic Region

216783 cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand

Details for - - cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504117

Tuberculist Genomic Region

21748 CD2-associated protein

Details for - - CD2-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12488

Tuberculist Genomic Region

258025 olfactory receptor 320

Details for RP23-128D9.8 - olfactory receptor 320

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216783

Tuberculist Genomic Region

434782 telomerase RNA component

Details for - - telomerase RNA component

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21748

Tuberculist Genomic Region

56381 olfactory receptor 1211

Details for RP23-260B13.3 - olfactory receptor 1211

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258025

Tuberculist Genomic Region

667712 predicted pseudogene 5637

Details for - - predicted pseudogene 5637

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434782

Tuberculist Genomic Region

74769 SPEN homolog, transcriptional regulator (Drosophila)

Details for RP23-308N2.11-002 - SPEN homolog, transcriptional regulator (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56381

Tuberculist Genomic Region

791293 predicted gene 8777

Details for - - predicted gene 8777

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 667712

Tuberculist Genomic Region

Details for - - phosphatidylinositol 3-kinase, catalytic, beta polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74769

Tuberculist Genomic Region

Details for - - predicted gene 9948

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 791293

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
T_MA0009.1 0.428571 0.0000415

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.16 ATAATWTTCAT V$ZNF333_01_M01230 29 AGAAAMATNANA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.01 GTCGTA Hoxd12.1, Hoxc12.1, Hoxd11.1, Hoxc11.1, Hoxc10.1, Hoxa11.1, IRC900814.1 1.38 CCATGTAC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
1.03 GCACGC NA NA 1.6 TTTCCATT NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-214, mmu-miR-761, mmu-miR-450b-5p 1 0

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-5131 0.6 0.0000018

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