PITA_74 megaCluster: 11 Residual: 0.26 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_74	11	0.26	13	0	0.822652	0.001

Members

Displaying 1 - 26 of 26

12028 cell division cycle 20 Details for RP23-145E1.5 - cell division cycle 20 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107995 Tuberculist Genomic Region	12448 BCL2-associated X protein Details for - - BCL2-associated X protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12028 Tuberculist Genomic Region
12545 cyclin E2 Details for RP23-343F17.5 - cyclin E2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12448 Tuberculist Genomic Region	17149 cell division cycle 7 (S. cerevisiae) Details for - - cell division cycle 7 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12545 Tuberculist Genomic Region
17217 mago-nashi homolog, proliferation-associated (Drosophila) Details for RP23-40G2.2 - mago-nashi homolog, proliferation-associated (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17149 Tuberculist Genomic Region	17220 minichromosome maintenance deficient 4 homolog (S. cerevisiae) Details for - - minichromosome maintenance deficient 4 homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17217 Tuberculist Genomic Region
20452 minichromosome maintenance deficient 7 (S. cerevisiae) Details for - - minichromosome maintenance deficient 7 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17220 Tuberculist Genomic Region	216864 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 Details for - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20452 Tuberculist Genomic Region
269702 macrophage galactose N-acetyl-galactosamine specific lectin 2 Details for DN-476D14.2 - macrophage galactose N-acetyl-galactosamine specific lectin 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216864 Tuberculist Genomic Region	28080 M-phase phosphoprotein 9 Details for - - M-phase phosphoprotein 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269702 Tuberculist Genomic Region
448850 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit Details for - - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 28080 Tuberculist Genomic Region	54124 zinc finger, HIT type 3 Details for RP23-391K14.3 - zinc finger, HIT type 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 448850 Tuberculist Genomic Region
66355 CDC28 protein kinase 1b Details for - - CDC28 protein kinase 1b GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54124 Tuberculist Genomic Region	66643 guanosine monophosphate reductase Details for - - guanosine monophosphate reductase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66355 Tuberculist Genomic Region
67041 limb expression 1 homolog (chicken) Details for - - limb expression 1 homolog (chicken) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66643 Tuberculist Genomic Region	67196 3-oxoacid CoA transferase 1 Details for - - 3-oxoacid CoA transferase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67041 Tuberculist Genomic Region
68090 ubiquitin-conjugating enzyme E2T (putative) Details for - - ubiquitin-conjugating enzyme E2T (putative) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67196 Tuberculist Genomic Region	68611 Yip1 interacting factor homolog A (S. cerevisiae) Details for - - Yip1 interacting factor homolog A (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68090 Tuberculist Genomic Region
72512 mitochondrial ribosomal protein L28 Details for - - mitochondrial ribosomal protein L28 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68611 Tuberculist Genomic Region	75597 transmembrane protein 173 Details for - - transmembrane protein 173 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72512 Tuberculist Genomic Region
18002 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2 Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75597 Tuberculist Genomic Region	218885 neural precursor cell expressed, developmentally down-regulated gene 8 Details for - - neural precursor cell expressed, developmentally down-regulated gene 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18002 Tuberculist Genomic Region
27405 oxidoreductase NAD-binding domain containing 1 Details for - - oxidoreductase NAD-binding domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218885 Tuberculist Genomic Region	66570 ATP-binding cassette, sub-family G (WHITE), member 3 Details for - - ATP-binding cassette, sub-family G (WHITE), member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27405 Tuberculist Genomic Region
71853 centromere protein M Details for - - centromere protein M GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66570 Tuberculist Genomic Region	Details for - - protein disulfide isomerase associated 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71853 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_STAT3_03_M01595	0.653846	0.0000108

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
140	TTTTNTTTTGTT	V$FOXP1_01_M00987	1000	GNCCAATGANNG	NFYA_MA0060.1, Gfi_MA0038.1, V$NFYA_Q5_M02106, V$NFY_01_M00287, V$NFY_Q6_M00185, V$NFYC_Q5_M02107, V$NFY_Q6_01_M00775, V$CAAT_01_M00254

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.29	CGTTCG	NA	1.44	CGCGTTCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.55	GNGAAC	NA	NA	0.79	GNGAACNG	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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