PITA_75 megaCluster: 11 Residual: 0.19

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_75 11 0.19 9 0 0.779583 0.004

Members

Displaying 1 - 53 of 53
12585 zinc finger CCCH type containing 7 A

Details for - - zinc finger CCCH type containing 7 A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106205

Tuberculist Genomic Region

14132 cerebellar degeneration-related 2

Details for - - cerebellar degeneration-related 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12585

Tuberculist Genomic Region

14645 Fc receptor, IgG, alpha chain transporter

Details for - - Fc receptor, IgG, alpha chain transporter

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14132

Tuberculist Genomic Region

15384 glutamate-ammonia ligase (glutamine synthetase)

Details for - - glutamate-ammonia ligase (glutamine synthetase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14645

Tuberculist Genomic Region

15985 heterogeneous nuclear ribonucleoprotein A/B

Details for RP23-79E13.1 - heterogeneous nuclear ribonucleoprotein A/B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15384

Tuberculist Genomic Region

17748 CD79B antigen

Details for RP23-418O11.7 - CD79B antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15985

Tuberculist Genomic Region

17988 metallothionein 1

Details for - - metallothionein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17748

Tuberculist Genomic Region

192169 N-myc downstream regulated gene 1

Details for - - N-myc downstream regulated gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17988

Tuberculist Genomic Region

20887 UFM1-specific peptidase 2

Details for - - UFM1-specific peptidase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 192169

Tuberculist Genomic Region

22036 sulfotransferase family 1A, phenol-preferring, member 1

Details for - - sulfotransferase family 1A, phenol-preferring, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20887

Tuberculist Genomic Region

22171 TRAF-interacting protein

Details for - - TRAF-interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22036

Tuberculist Genomic Region

226849 thymidylate synthase

Details for - - thymidylate synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22171

Tuberculist Genomic Region

268759 protein phosphatase 2, regulatory subunit B', alpha

Details for - - protein phosphatase 2, regulatory subunit B', alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226849

Tuberculist Genomic Region

381650 RIKEN cDNA 9930012K11 gene

Details for - - RIKEN cDNA 9930012K11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 268759

Tuberculist Genomic Region

384009 THAP domain containing 6

Details for - - THAP domain containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381650

Tuberculist Genomic Region

54725 GLI pathogenesis-related 2

Details for RP23-209M8.2 - GLI pathogenesis-related 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 384009

Tuberculist Genomic Region

66586 cell adhesion molecule 1

Details for - - cell adhesion molecule 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54725

Tuberculist Genomic Region

67804 cardiolipin synthase 1

Details for RP23-77H16.4 - cardiolipin synthase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66586

Tuberculist Genomic Region

67834 sorting nexin 2

Details for - - sorting nexin 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67804

Tuberculist Genomic Region

71275 isocitrate dehydrogenase 3 (NAD+) alpha

Details for - - isocitrate dehydrogenase 3 (NAD+) alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67834

Tuberculist Genomic Region

723891 NADP+ dependent oxidoreductase domain containing 1

Details for - - NADP+ dependent oxidoreductase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71275

Tuberculist Genomic Region

78903 microRNA 19a

Details for - - microRNA 19a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723891

Tuberculist Genomic Region

100039768 Werner helicase interacting protein 1

Details for RP23-427P14.3 - Werner helicase interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78903

Tuberculist Genomic Region

12304 RIKEN cDNA 1700024F20 gene

Details for - - RIKEN cDNA 1700024F20 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100039768

Tuberculist Genomic Region

217262 protein disulfide isomerase associated 4

Details for - - protein disulfide isomerase associated 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12304

Tuberculist Genomic Region

246707 ATP-binding cassette, sub-family A (ABC1), member 9

Details for RP23-328B4.1 - ATP-binding cassette, sub-family A (ABC1), member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217262

Tuberculist Genomic Region

66181 elastin microfibril interfacer 2

Details for - - elastin microfibril interfacer 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 246707

Tuberculist Genomic Region

66368 NOP10 ribonucleoprotein

Details for RP23-63C10.4 - NOP10 ribonucleoprotein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66181

Tuberculist Genomic Region

66978 RNA 3'-terminal phosphate cyclase

Details for - - RNA 3'-terminal phosphate cyclase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66368

Tuberculist Genomic Region

67891 Luc7 homolog (S. cerevisiae)-like

Details for - - Luc7 homolog (S. cerevisiae)-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66978

Tuberculist Genomic Region

73739 ribosomal protein L4

Details for - - ribosomal protein L4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67891

Tuberculist Genomic Region

78246 chibby homolog 1 (Drosophila)

Details for - - chibby homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73739

Tuberculist Genomic Region

109778 PHD finger protein 23

Details for RP23-172M21.13-002 - PHD finger protein 23

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78246

Tuberculist Genomic Region

110006 biliverdin reductase A

Details for RP23-26A12.2 - biliverdin reductase A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109778

Tuberculist Genomic Region

12757 glucuronidase, beta

Details for - - glucuronidase, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110006

Tuberculist Genomic Region

17997 clathrin, light polypeptide (Lca)

Details for RP23-209M8.4 - clathrin, light polypeptide (Lca)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12757

Tuberculist Genomic Region

19718 neural precursor cell expressed, developmentally down-regulated gene 1

Details for - - neural precursor cell expressed, developmentally down-regulated gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17997

Tuberculist Genomic Region

225745 replication factor C (activator 1) 2

Details for - - replication factor C (activator 1) 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19718

Tuberculist Genomic Region

235320 HAUS augmin-like complex, subunit 1

Details for - - HAUS augmin-like complex, subunit 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225745

Tuberculist Genomic Region

23834 zinc finger and BTB domain containing 16

Details for - - zinc finger and BTB domain containing 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235320

Tuberculist Genomic Region

239839 cell division cycle 6

Details for RP23-333D2.2 - cell division cycle 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23834

Tuberculist Genomic Region

240641 coiled-coil domain containing 14

Details for - - coiled-coil domain containing 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 239839

Tuberculist Genomic Region

29870 kinesin family member 20B

Details for - - kinesin family member 20B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240641

Tuberculist Genomic Region

381280 G two S phase expressed protein 1

Details for - - G two S phase expressed protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29870

Tuberculist Genomic Region

66455 Holliday junction recognition protein

Details for - - Holliday junction recognition protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381280

Tuberculist Genomic Region

67247 canopy 4 homolog (zebrafish)

Details for - - canopy 4 homolog (zebrafish)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66455

Tuberculist Genomic Region

67681 mitochondrial amidoxime reducing component 2

Details for - - mitochondrial amidoxime reducing component 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67247

Tuberculist Genomic Region

68275 mitochondrial ribosomal protein L18

Details for - - mitochondrial ribosomal protein L18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67681

Tuberculist Genomic Region

71924 replication protein A1

Details for RP23-113D4.1 - replication protein A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68275

Tuberculist Genomic Region

72103 epsilon-tubulin 1

Details for - - epsilon-tubulin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71924

Tuberculist Genomic Region

74041 aprataxin and PNKP like factor

Details for - - aprataxin and PNKP like factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72103

Tuberculist Genomic Region

98386 RIKEN cDNA 4632434I11 gene

Details for - - RIKEN cDNA 4632434I11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74041

Tuberculist Genomic Region

Details for - - lamin B receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98386

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
SPIC_ETS_full_monomeric_14_1 0.34 0.0000143

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00043 ARAAMMAAANAA Foxd3_MA0041.1, FOXI1_MA0042.1 0.0037 GRAAGNGGAAG ETV6_ETS_full_dimeric_15_1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.15 GTCGCG Zfp161.2, Max.2 1.18 GCCGANAG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.39 CGCGTC NA NA 0.47 TACGGNGA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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