TargetScan_101 megaCluster: 10 Residual: 0.26

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_101 10 0.26 15 0 0.867113 0

Members

Displaying 1 - 31 of 31
20226 gene trap locus 3

Details for - - gene trap locus 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14894

Tuberculist Genomic Region

223921 seryl-aminoacyl-tRNA synthetase

Details for RP23-37G19.1 - seryl-aminoacyl-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20226

Tuberculist Genomic Region

27401 achalasia, adrenocortical insufficiency, alacrimia

Details for - - achalasia, adrenocortical insufficiency, alacrimia

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223921

Tuberculist Genomic Region

319701 S-phase kinase-associated protein 2 (p45)

Details for - - S-phase kinase-associated protein 2 (p45)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27401

Tuberculist Genomic Region

50496 F-box protein 48

Details for RP23-295E4.4 - F-box protein 48

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 319701

Tuberculist Genomic Region

52626 E2F transcription factor 6

Details for - - E2F transcription factor 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50496

Tuberculist Genomic Region

54131 CDKN2A interacting protein N-terminal like

Details for RP23-263C23.1 - CDKN2A interacting protein N-terminal like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52626

Tuberculist Genomic Region

67130 interferon regulatory factor 3

Details for - - interferon regulatory factor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54131

Tuberculist Genomic Region

69226 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67130

Tuberculist Genomic Region

69482 sorting nexing 24

Details for - - sorting nexing 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69226

Tuberculist Genomic Region

69976 nucleoporin 35

Details for RP23-393F9.4 - nucleoporin 35

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69482

Tuberculist Genomic Region

72357 galactokinase 2

Details for RP23-386I21.1 - galactokinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69976

Tuberculist Genomic Region

106344 RIKEN cDNA 2210016L21 gene

Details for - - RIKEN cDNA 2210016L21 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72357

Tuberculist Genomic Region

109910 replication factor C (activator 1) 4

Details for - - replication factor C (activator 1) 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106344

Tuberculist Genomic Region

12021 zinc finger protein 91

Details for - - zinc finger protein 91

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109910

Tuberculist Genomic Region

18452 BRCA1 associated RING domain 1

Details for - - BRCA1 associated RING domain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12021

Tuberculist Genomic Region

195040 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide

Details for RP23-309E16.6 - procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18452

Tuberculist Genomic Region

227619 transmembrane protein 199

Details for RP23-399H5.5 - transmembrane protein 199

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 195040

Tuberculist Genomic Region

229603 mannosidase, alpha, class 1B, member 1

Details for RP23-47P18.1 - mannosidase, alpha, class 1B, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227619

Tuberculist Genomic Region

230996 OTU domain containing 7B

Details for - - OTU domain containing 7B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229603

Tuberculist Genomic Region

52679 RIKEN cDNA 9430015G10 gene

Details for RP23-139J18.1 - RIKEN cDNA 9430015G10 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230996

Tuberculist Genomic Region

54633 E2F transcription factor 7

Details for - - E2F transcription factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52679

Tuberculist Genomic Region

57314 polyglutamine binding protein 1

Details for RP23-443E19.4 - polyglutamine binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54633

Tuberculist Genomic Region

66928 negative elongation factor complex member C/D, Th1l

Details for RP23-59M10.1 - negative elongation factor complex member C/D, Th1l

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57314

Tuberculist Genomic Region

67429 transmembrane protein 261

Details for RP24-200F10.1 - transmembrane protein 261

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66928

Tuberculist Genomic Region

67905 NudC domain containing 1

Details for - - NudC domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67429

Tuberculist Genomic Region

76843 protein phosphatase 1M

Details for - - protein phosphatase 1M

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67905

Tuberculist Genomic Region

212377 denticleless homolog (Drosophila)

Details for - - denticleless homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76843

Tuberculist Genomic Region

64214 MMS22-like, DNA repair protein

Details for - - MMS22-like, DNA repair protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212377

Tuberculist Genomic Region

66929 regulator of G-protein signaling 18

Details for - - regulator of G-protein signaling 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64214

Tuberculist Genomic Region

Details for - - ASF1 anti-silencing function 1 homolog B (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66929

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000068 AAAAARANAAAA NA 1300 TGGGARAYGTAG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.67 CGCGGT NA 1.71 GCGGAACG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.51 CGCACG NA NA 0.67 ATGTCNCG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-875-5p 0.310345 0.0000227

Add comment

Log in or register to post comments