TargetScan_14 megaCluster: 2 Residual: 0.27

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_14 2 0.27 8 0 0.722463 0.417

Members

Displaying 1 - 28 of 28
100504591 predicted gene 15987

Details for - - predicted gene 15987

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504591

Tuberculist Genomic Region

108767 proline-rich nuclear receptor coactivator 1

Details for RP23-12I24.7 - proline-rich nuclear receptor coactivator 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108767

Tuberculist Genomic Region

11853 ras homolog gene family, member C

Details for - - ras homolog gene family, member C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11853

Tuberculist Genomic Region

11982 ATPase, class V, type 10A

Details for - - ATPase, class V, type 10A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11982

Tuberculist Genomic Region

12394 runt related transcription factor 1

Details for - - runt related transcription factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12394

Tuberculist Genomic Region

13653 early growth response 1

Details for - - early growth response 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13653

Tuberculist Genomic Region

15039 histocompatibility 2, T region locus 22

Details for - - histocompatibility 2, T region locus 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15039

Tuberculist Genomic Region

15042 histocompatibility 2, T region locus 24

Details for - - histocompatibility 2, T region locus 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15042

Tuberculist Genomic Region

16890 lipase, hormone sensitive

Details for mCG_147818 - lipase, hormone sensitive

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16890

Tuberculist Genomic Region

17113 mannose-6-phosphate receptor, cation dependent

Details for - - mannose-6-phosphate receptor, cation dependent

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17113

Tuberculist Genomic Region

218793 ubiquitin-conjugating enzyme E2E 2

Details for - - ubiquitin-conjugating enzyme E2E 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218793

Tuberculist Genomic Region

22329 vascular cell adhesion molecule 1

Details for - - vascular cell adhesion molecule 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22329

Tuberculist Genomic Region

319916 RIKEN cDNA A730011C13 gene

Details for - - RIKEN cDNA A730011C13 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 319916

Tuberculist Genomic Region

320207 phosphoinositide-3-kinase, regulatory subunit 5, p101

Details for RP23-432M23.2 - phosphoinositide-3-kinase, regulatory subunit 5, p101

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320207

Tuberculist Genomic Region

328309 predicted gene 9776

Details for - - predicted gene 9776

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 328309

Tuberculist Genomic Region

54123 interferon regulatory factor 7

Details for - - interferon regulatory factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54123

Tuberculist Genomic Region

56715 RAB guanine nucleotide exchange factor (GEF) 1

Details for - - RAB guanine nucleotide exchange factor (GEF) 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56715

Tuberculist Genomic Region

57783 TNFAIP3 interacting protein 1

Details for - - TNFAIP3 interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57783

Tuberculist Genomic Region

620078 RIKEN cDNA C130026I21 gene

Details for - - RIKEN cDNA C130026I21 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 620078

Tuberculist Genomic Region

628693 predicted gene 6904

Details for mCG_6143 - predicted gene 6904

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 628693

Tuberculist Genomic Region

67067 reactive oxygen species modulator 1

Details for RP23-107C23.2 - reactive oxygen species modulator 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67067

Tuberculist Genomic Region

69562 cyclin-dependent kinase 13

Details for - - cyclin-dependent kinase 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69562

Tuberculist Genomic Region

72244 RIKEN cDNA 1600014C10 gene

Details for - - RIKEN cDNA 1600014C10 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72244

Tuberculist Genomic Region

80287 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3

Details for - - apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80287

Tuberculist Genomic Region

94112 mediator complex subunit 15

Details for - - mediator complex subunit 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94112

Tuberculist Genomic Region

207683 immunoglobulin superfamily, member 11

Details for RP23-131M7.1 - immunoglobulin superfamily, member 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 207683

Tuberculist Genomic Region

27218 signaling lymphocytic activation molecule family member 1

Details for - - signaling lymphocytic activation molecule family member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27218

Tuberculist Genomic Region

667034 purine-nucleoside phosphorylase 2

Details for - - purine-nucleoside phosphorylase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 667034

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRF3_IRF_full_trimeric_21_1 0.48 0.00000162

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.029 TTTCNTTTTNT NA 60 AAAGTTAGAAMT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.92 GTCGCG Zfp161.2 0.99 AAGCGCTG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.67 GGTNGGTT NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-26a, mmu-miR-26b 0.772727 0.0000445

3p UTR TargetScan

miRNAs percTargets pValue
NA

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