TargetScan_147 megaCluster: 9 Residual: 0.16 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_147	9	0.16	15	0	0.953807	0

Members

Displaying 1 - 30 of 30

14697 guanine nucleotide binding protein (G protein), beta 5 Details for - - guanine nucleotide binding protein (G protein), beta 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14697 Tuberculist Genomic Region	15547 TRM2 tRNA methyltransferase 2A Details for - - TRM2 tRNA methyltransferase 2A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15547 Tuberculist Genomic Region
217031 transcriptional adaptor 2A Details for RP23-395B22.4 - transcriptional adaptor 2A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 217031 Tuberculist Genomic Region	22121 ribosomal protein L13A Details for - - ribosomal protein L13A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22121 Tuberculist Genomic Region
223433 family with sequence similarity 105, member A Details for - - family with sequence similarity 105, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 223433 Tuberculist Genomic Region	241633 ATPase, class I, type 8B, member 4 Details for RP23-460B5.1 - ATPase, class I, type 8B, member 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 241633 Tuberculist Genomic Region
242474 transmembrane protein 245 Details for RP23-455B1.3 - transmembrane protein 245 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 242474 Tuberculist Genomic Region	26926 apoptosis-inducing factor, mitochondrion-associated 1 Details for RP23-35N5.1 - apoptosis-inducing factor, mitochondrion-associated 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26926 Tuberculist Genomic Region
66257 nicolin 1 Details for - - nicolin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66257 Tuberculist Genomic Region	72549 receptor accessory protein 4 Details for - - receptor accessory protein 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72549 Tuberculist Genomic Region
72722 family with sequence similarity 98, member A Details for - - family with sequence similarity 98, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72722 Tuberculist Genomic Region	76491 abhydrolase domain containing 14b Details for - - abhydrolase domain containing 14b GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76491 Tuberculist Genomic Region
102334 ankyrin repeat domain 10 Details for - - ankyrin repeat domain 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 102334 Tuberculist Genomic Region	108735 SFT2 domain containing 2 Details for - - SFT2 domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108735 Tuberculist Genomic Region
108911 regulator of chromosome condensation 2 Details for RP23-275J10.2 - regulator of chromosome condensation 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108911 Tuberculist Genomic Region	18105 NAD(P)H dehydrogenase, quinone 2 Details for - - NAD(P)H dehydrogenase, quinone 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18105 Tuberculist Genomic Region
20480 ClpB caseinolytic peptidase B Details for - - ClpB caseinolytic peptidase B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20480 Tuberculist Genomic Region	216527 cerebral cavernous malformation 2 Details for RP23-169J19.3 - cerebral cavernous malformation 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216527 Tuberculist Genomic Region
227102 ORM1-like 1 (S. cerevisiae) Details for - - ORM1-like 1 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227102 Tuberculist Genomic Region	231834 sorting nexin 8 Details for - - sorting nexin 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231834 Tuberculist Genomic Region
26406 mitogen-activated protein kinase kinase kinase 3 Details for RP23-81G14.5 - mitogen-activated protein kinase kinase kinase 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26406 Tuberculist Genomic Region	269702 M-phase phosphoprotein 9 Details for - - M-phase phosphoprotein 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269702 Tuberculist Genomic Region
27401 S-phase kinase-associated protein 2 (p45) Details for - - S-phase kinase-associated protein 2 (p45) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27401 Tuberculist Genomic Region	52538 acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) Details for - - acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52538 Tuberculist Genomic Region
64214 regulator of G-protein signaling 18 Details for - - regulator of G-protein signaling 18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 64214 Tuberculist Genomic Region	69976 galactokinase 2 Details for RP23-386I21.1 - galactokinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69976 Tuberculist Genomic Region
71538 f-box protein 9 Details for MNCb-2471 - f-box protein 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71538 Tuberculist Genomic Region	72503 RIKEN cDNA 2610507B11 gene Details for RP23-185A18.9 - RIKEN cDNA 2610507B11 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72503 Tuberculist Genomic Region
110173 mannosidase, beta A, lysosomal Details for - - mannosidase, beta A, lysosomal GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110173 Tuberculist Genomic Region	12566 cyclin-dependent kinase 2 Details for - - cyclin-dependent kinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12566 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
NA

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.0025	RGCCCCGCCCC	SP1_MA0079.2, Klf4_MA0039.2, SP1_MA0079.1, V$SP1_Q6_01_M00931, V$SP1_Q6_M00196, V$SP1_Q4_01_M00932, V$SP4_Q5_M01273, V$MAZR_01_M00491, V$KLF7_03_M02773, V$SP1_02_M01303, V$GC_01_M00255, V$SP1_Q2_01_M00933, V$UF1H3BETA_Q6_M01068, V$SP1_03_M02281, V$ZFP281_01_M01597, V$GKLF_02_M01588, V$SP1_01_M00008, V$SP4_03_M02810, V$SP2_01_M01783, V$CKROX_Q2_M01175, V$E2F3_Q6_M02089, V$BCL6B_04_M02844, V$SMAD4_04_M02898, V$KROX_Q6_M00982, V$ETF_Q6_M00695, V$MAZ_Q6_M00649, V$ZNF219_01_M01122, V$CACD_01_M01113, V$ZFP281_04_M02831, V$EGR1_Q6_M01873, V$SP1SP3_Q4_M01219, V$EGR1_06_M02744, V$ZFP410_04_M02936, V$MAZ_Q6_01_M02023, V$CNOT3_01_M01253, V$CACBINDINGPROTEIN_Q6_M00720, V$EKLF_Q5_M01874, V$ZBP89_Q4_M01816, V$SP4_04_M02914, V$FKLF_Q5_M01837, V$ZFP740_03_M02834, Klf7.1, Sp4.1, Bcl6b.2, Smad3.1, Egr1.1, Zfp281.2, Zfp410.1, Sp4.2, Zfp740.1, Ascl2.2, Zif268.1, Glis2.1, SP4_C2H2_full_monomeric_17_1, KLF16_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, SP1_C2H2_DBD_monomeric_11_1, Klf12_C2H2_DBD_monomeric_15_1, SP3_C2H2_DBD_monomeric_11_1, KLF13_C2H2_full_monomeric_18_1, ZNF740_C2H2_full_monomeric_10_1, SP8_C2H2_DBD_monomeric_12_1	6100	CTACAAMTCCCA	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.2	CGACCG	NA	1.46	CANCGCGC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.54	TCGGAT	NA	NA	0.69	GCCTTTTC	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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