TargetScan_148 megaCluster: 2 Residual: 0.18

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_148 2 0.18 15 0 0.93563 0

Members

Displaying 1 - 31 of 31
100504219 predicted gene, 20117

Details for - - predicted gene, 20117

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504219

Tuberculist Genomic Region

11540 adenosine A2a receptor

Details for - - adenosine A2a receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11540

Tuberculist Genomic Region

12822 collagen, type XVIII, alpha 1

Details for - - collagen, type XVIII, alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12822

Tuberculist Genomic Region

170755 serum/glucocorticoid regulated kinase 3

Details for - - serum/glucocorticoid regulated kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170755

Tuberculist Genomic Region

18126 nitric oxide synthase 2, inducible

Details for RP23-341J22.2 - nitric oxide synthase 2, inducible

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18126

Tuberculist Genomic Region

20351 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

Details for - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20351

Tuberculist Genomic Region

22271 uridine phosphorylase 1

Details for RP23-104F14.1 - uridine phosphorylase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22271

Tuberculist Genomic Region

227960 grancalcin

Details for RP23-34J8.3 - grancalcin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227960

Tuberculist Genomic Region

329795 transmembrane protein 67

Details for RP23-203A12.5 - transmembrane protein 67

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329795

Tuberculist Genomic Region

330723 HtrA serine peptidase 4

Details for - - HtrA serine peptidase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 330723

Tuberculist Genomic Region

620913 predicted gene 12185

Details for RP23-14F5.7 - predicted gene 12185

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 620913

Tuberculist Genomic Region

671535 poly (ADP-ribose) polymerase family, member 10

Details for - - poly (ADP-ribose) polymerase family, member 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 671535

Tuberculist Genomic Region

74096 hydrogen voltage-gated channel 1

Details for - - hydrogen voltage-gated channel 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74096

Tuberculist Genomic Region

100382 expressed sequence AW011738

Details for - - expressed sequence AW011738

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100382

Tuberculist Genomic Region

102132 RIKEN cDNA E230013L22 gene

Details for - - RIKEN cDNA E230013L22 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102132

Tuberculist Genomic Region

11758 peroxiredoxin 6

Details for - - peroxiredoxin 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11758

Tuberculist Genomic Region

14058 coagulation factor X

Details for - - coagulation factor X

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14058

Tuberculist Genomic Region

19088 protein kinase, cAMP dependent regulatory, type II beta

Details for RP23-193M19.1 - protein kinase, cAMP dependent regulatory, type II beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19088

Tuberculist Genomic Region

19332 RAB20, member RAS oncogene family

Details for - - RAB20, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19332

Tuberculist Genomic Region

20706 serine (or cysteine) peptidase inhibitor, clade B, member 9b

Details for RP23-391I11.4 - serine (or cysteine) peptidase inhibitor, clade B, member 9b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20706

Tuberculist Genomic Region

214639 RIKEN cDNA 4930486L24 gene

Details for - - RIKEN cDNA 4930486L24 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214639

Tuberculist Genomic Region

22021 protein-tyrosine sulfotransferase 1

Details for - - protein-tyrosine sulfotransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22021

Tuberculist Genomic Region

22341 vascular endothelial growth factor C

Details for - - vascular endothelial growth factor C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22341

Tuberculist Genomic Region

231712 TRAF type zinc finger domain containing 1

Details for - - TRAF type zinc finger domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231712

Tuberculist Genomic Region

434341 NLR family, CARD domain containing 5

Details for mCG_131283 - NLR family, CARD domain containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434341

Tuberculist Genomic Region

69028 MIT, microtubule interacting and transport, domain containing 1

Details for - - MIT, microtubule interacting and transport, domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69028

Tuberculist Genomic Region

71684 RNA binding motif protein 43

Details for RP23-332K7.2 - RNA binding motif protein 43

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71684

Tuberculist Genomic Region

72075 opioid growth factor receptor

Details for RP23-74K21.5 - opioid growth factor receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72075

Tuberculist Genomic Region

76187 alcohol dehydrogenase, iron containing, 1

Details for - - alcohol dehydrogenase, iron containing, 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76187

Tuberculist Genomic Region

667034 purine-nucleoside phosphorylase 2

Details for - - purine-nucleoside phosphorylase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 667034

Tuberculist Genomic Region

16169 interleukin 15 receptor, alpha chain

Details for RP23-114B13.4 - interleukin 15 receptor, alpha chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16169

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_IRF2_Q6_M01882 0.428571 0.0000409

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000076 TTTNNTTTTCTT NA 21000 NGARACTCTGA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.91 CCCACG V$GLI1_01_M01702, V$RBPJK_01_M01112, V$RBPJK_Q4_M01111, V$GLI2_01_M01703, V$EGR1_02_M01972, V$GLI3_02_M01704, Zif268.1 0.93 ACCCCACG Zfp740.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.48 GTATAC NA NA 0.71 CTCCTACG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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