TargetScan_177 megaCluster: 1 Residual: 0.27

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_177 1 0.27 15 0 0.867381 0

Members

Displaying 1 - 44 of 44
105203 predicted gene, 20114

Details for - - predicted gene, 20114

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504211

Tuberculist Genomic Region

105522 cDNA sequence BC016423

Details for - - cDNA sequence BC016423

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105203

Tuberculist Genomic Region

112407 ankyrin repeat domain 28

Details for - - ankyrin repeat domain 28

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105522

Tuberculist Genomic Region

14629 EGL nine homolog 3 (C. elegans)

Details for - - EGL nine homolog 3 (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 112407

Tuberculist Genomic Region

15273 glutamate-cysteine ligase, catalytic subunit

Details for - - glutamate-cysteine ligase, catalytic subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14629

Tuberculist Genomic Region

15368 human immunodeficiency virus type I enhancer binding protein 2

Details for - - human immunodeficiency virus type I enhancer binding protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15273

Tuberculist Genomic Region

16177 heme oxygenase (decycling) 1

Details for - - heme oxygenase (decycling) 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15368

Tuberculist Genomic Region

17133 interleukin 1 receptor, type I

Details for - - interleukin 1 receptor, type I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16177

Tuberculist Genomic Region

17750 v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)

Details for - - v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17133

Tuberculist Genomic Region

19386 metallothionein 2

Details for - - metallothionein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17750

Tuberculist Genomic Region

20238 RAN binding protein 2

Details for - - RAN binding protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19386

Tuberculist Genomic Region

20266 ataxin 1

Details for - - ataxin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20238

Tuberculist Genomic Region

20698 sodium channel, voltage-gated, type I, beta

Details for - - sodium channel, voltage-gated, type I, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20266

Tuberculist Genomic Region

208647 sphingosine kinase 1

Details for RP23-193A16.4 - sphingosine kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20698

Tuberculist Genomic Region

22339 cAMP responsive element binding protein 3-like 2

Details for - - cAMP responsive element binding protein 3-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208647

Tuberculist Genomic Region

233489 vascular endothelial growth factor A

Details for - - vascular endothelial growth factor A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22339

Tuberculist Genomic Region

27279 phosphatidylinositol binding clathrin assembly protein

Details for - - phosphatidylinositol binding clathrin assembly protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233489

Tuberculist Genomic Region

50772 tumor necrosis factor receptor superfamily, member 12a

Details for - - tumor necrosis factor receptor superfamily, member 12a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27279

Tuberculist Genomic Region

58250 mitogen-activated protein kinase 6

Details for - - mitogen-activated protein kinase 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50772

Tuberculist Genomic Region

664608 carbohydrate sulfotransferase 11

Details for - - carbohydrate sulfotransferase 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58250

Tuberculist Genomic Region

67876 reproductive homeobox 4G

Details for - - reproductive homeobox 4G

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 664608

Tuberculist Genomic Region

70686 coenzyme Q10 homolog B (S. cerevisiae)

Details for - - coenzyme Q10 homolog B (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67876

Tuberculist Genomic Region

100041555 dual specificity phosphatase 16

Details for - - dual specificity phosphatase 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70686

Tuberculist Genomic Region

110796 ribosomal protein L10, pseudogene 5

Details for - - ribosomal protein L10, pseudogene 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100041555

Tuberculist Genomic Region

14062 teashirt zinc finger family member 1

Details for - - teashirt zinc finger family member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110796

Tuberculist Genomic Region

14173 coagulation factor II (thrombin) receptor

Details for - - coagulation factor II (thrombin) receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14062

Tuberculist Genomic Region

14766 fibroblast growth factor 2

Details for DN-452A22.6 - fibroblast growth factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14173

Tuberculist Genomic Region

15200 G protein-coupled receptor 56

Details for - - G protein-coupled receptor 56

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14766

Tuberculist Genomic Region

18124 heparin-binding EGF-like growth factor

Details for - - heparin-binding EGF-like growth factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15200

Tuberculist Genomic Region

213053 nuclear receptor subfamily 4, group A, member 3

Details for RP23-122N18.2 - nuclear receptor subfamily 4, group A, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18124

Tuberculist Genomic Region

244668 solute carrier family 39 (zinc transporter), member 14

Details for - - solute carrier family 39 (zinc transporter), member 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213053

Tuberculist Genomic Region

246083 signal-induced proliferation-associated 1 like 2

Details for - - signal-induced proliferation-associated 1 like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244668

Tuberculist Genomic Region

327900 defensin beta 13

Details for AL590619.7 - defensin beta 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 246083

Tuberculist Genomic Region

50493 ubiquitin domain containing 2

Details for RP23-395O6.1 - ubiquitin domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327900

Tuberculist Genomic Region

52614 thioredoxin reductase 1

Details for - - thioredoxin reductase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50493

Tuberculist Genomic Region

54720 EGF-like module containing, mucin-like, hormone receptor-like sequence 4

Details for - - EGF-like module containing, mucin-like, hormone receptor-like sequence 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52614

Tuberculist Genomic Region

56193 regulator of calcineurin 1

Details for - - regulator of calcineurin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54720

Tuberculist Genomic Region

56620 pleckstrin

Details for RP23-348N2.1 - pleckstrin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56193

Tuberculist Genomic Region

68166 C-type lectin domain family 4, member n

Details for - - C-type lectin domain family 4, member n

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56620

Tuberculist Genomic Region

75646 spire homolog 1 (Drosophila)

Details for - - spire homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68166

Tuberculist Genomic Region

80796 retinoic acid induced 14

Details for - - retinoic acid induced 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75646

Tuberculist Genomic Region

81703 calmodulin 4

Details for - - calmodulin 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80796

Tuberculist Genomic Region

75869 Jun dimerization protein 2

Details for - - Jun dimerization protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 81703

Tuberculist Genomic Region

Details for - - ADP-ribosylation factor-like 5B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75869

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_NKX25_Q6_M02108 0.341463 0.0000138

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000052 AARAAAAAAAAA NA 24 ANTTANTKTAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.07 CGCGAC Zfp161.2, Max.2 1.03 CTCGGTCG

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.6 CGTCGT NA NA 0.52 ACGTCGTT NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-337-5p 0.333333 0.00000161

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-466l-3p 0.578947 0.0000562

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