TargetScan_199 megaCluster: 11 Residual: 0.29

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_199 11 0.29 15 0 0.854662 0

Members

Displaying 1 - 21 of 21
13864 nuclear receptor subfamily 2, group F, member 6

Details for - - nuclear receptor subfamily 2, group F, member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13864

Tuberculist Genomic Region

20527 solute carrier family 2 (facilitated glucose transporter), member 3

Details for - - solute carrier family 2 (facilitated glucose transporter), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20527

Tuberculist Genomic Region

67608 nuclear prelamin A recognition factor

Details for RP23-349B15.5 - nuclear prelamin A recognition factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67608

Tuberculist Genomic Region

67976 TraB domain containing

Details for - - TraB domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67976

Tuberculist Genomic Region

68581 transmembrane emp24-like trafficking protein 10 (yeast)

Details for - - transmembrane emp24-like trafficking protein 10 (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68581

Tuberculist Genomic Region

93790 non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)

Details for MNCb-2146 - non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 93790

Tuberculist Genomic Region

100042332 RIKEN cDNA 2810410L24 gene

Details for - - RIKEN cDNA 2810410L24 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100042332

Tuberculist Genomic Region

105245 thioredoxin domain containing 5

Details for - - thioredoxin domain containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105245

Tuberculist Genomic Region

13205 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked

Details for RP23-158L19.4 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13205

Tuberculist Genomic Region

20918 eukaryotic translation initiation factor 1

Details for RP23-392I3.1 - eukaryotic translation initiation factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20918

Tuberculist Genomic Region

216873 sperm associated antigen 7

Details for DN-183N8.18-002 - sperm associated antigen 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216873

Tuberculist Genomic Region

226419 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3

Details for - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226419

Tuberculist Genomic Region

235320 zinc finger and BTB domain containing 16

Details for - - zinc finger and BTB domain containing 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235320

Tuberculist Genomic Region

268759 RIKEN cDNA 9930012K11 gene

Details for - - RIKEN cDNA 9930012K11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 268759

Tuberculist Genomic Region

27643 ubiquitin-like 4

Details for RP23-436K3.13-006 - ubiquitin-like 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27643

Tuberculist Genomic Region

320332 histone cluster 4, H4

Details for mCG_49272 - histone cluster 4, H4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320332

Tuberculist Genomic Region

58801 phorbol-12-myristate-13-acetate-induced protein 1

Details for - - phorbol-12-myristate-13-acetate-induced protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58801

Tuberculist Genomic Region

66162 bolA-like 2 (E. coli)

Details for - - bolA-like 2 (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66162

Tuberculist Genomic Region

68911 pygopus 2

Details for - - pygopus 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68911

Tuberculist Genomic Region

69482 nucleoporin 35

Details for RP23-393F9.4 - nucleoporin 35

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69482

Tuberculist Genomic Region

71609 TNFRSF1A-associated via death domain

Details for - - TNFRSF1A-associated via death domain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71609

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
SP1_MA0079.2, V_SP1_03_M02281 1, 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
33 GAAAAAAWAAA NA 15000 AACTTTAATTTG ARID3A_MA0151.1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.41 GACGCG NA 1.82 GCGCCGTT E2F3.1, E2F2.2, E2F2.1, E2F3.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.66 TAGGTC NA NA 0.98 CCCNCCTA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-202-3p 0.45 0.00000965

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