TargetScan_201 megaCluster: 3 Residual: 0.19

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_201 3 0.19 15 0 0.932578 0

Members

Displaying 1 - 34 of 34
100503498 predicted gene, 16675

Details for - - predicted gene, 16675

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503498

Tuberculist Genomic Region

102103 mitochondrial tumor suppressor 1

Details for - - mitochondrial tumor suppressor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102103

Tuberculist Genomic Region

12289 calcium channel, voltage-dependent, L type, alpha 1D subunit

Details for - - calcium channel, voltage-dependent, L type, alpha 1D subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12289

Tuberculist Genomic Region

15439 haptoglobin

Details for - - haptoglobin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15439

Tuberculist Genomic Region

20846 signal transducer and activator of transcription 1

Details for - - signal transducer and activator of transcription 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20846

Tuberculist Genomic Region

209387 tripartite motif-containing 30D

Details for - - tripartite motif-containing 30D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209387

Tuberculist Genomic Region

27056 interferon regulatory factor 5

Details for - - interferon regulatory factor 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27056

Tuberculist Genomic Region

320148 RIKEN cDNA B430306N03 gene

Details for - - RIKEN cDNA B430306N03 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320148

Tuberculist Genomic Region

380863 transmembrane protein 171

Details for - - transmembrane protein 171

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 380863

Tuberculist Genomic Region

432555 predicted gene 5431

Details for RP23-14F5.8 - predicted gene 5431

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 432555

Tuberculist Genomic Region

50934 solute carrier family 7 (cationic amino acid transporter, y+ system), member 8

Details for - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50934

Tuberculist Genomic Region

574428 zinc finger, MYND-type containing 15

Details for DN-491F10.7 - zinc finger, MYND-type containing 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 574428

Tuberculist Genomic Region

107350 expressed sequence AW112010

Details for - - expressed sequence AW112010

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107350

Tuberculist Genomic Region

108670 epithelial stromal interaction 1 (breast)

Details for - - epithelial stromal interaction 1 (breast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108670

Tuberculist Genomic Region

109082 F-box and WD-40 domain protein 17

Details for - - F-box and WD-40 domain protein 17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109082

Tuberculist Genomic Region

20723 serine (or cysteine) peptidase inhibitor, clade B, member 9

Details for RP23-391I11.1 - serine (or cysteine) peptidase inhibitor, clade B, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20723

Tuberculist Genomic Region

209488 hematopoietic SH2 domain containing

Details for - - hematopoietic SH2 domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209488

Tuberculist Genomic Region

211798 major facilitator superfamily domain containing 9

Details for - - major facilitator superfamily domain containing 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211798

Tuberculist Genomic Region

21899 toll-like receptor 6

Details for - - toll-like receptor 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21899

Tuberculist Genomic Region

219132 PHD finger protein 11D

Details for mCG_13856 - PHD finger protein 11D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 219132

Tuberculist Genomic Region

223672 apolipoprotein L 9a

Details for - - apolipoprotein L 9a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223672

Tuberculist Genomic Region

22436 xanthine dehydrogenase

Details for - - xanthine dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22436

Tuberculist Genomic Region

235330 tetratricopeptide repeat domain 12

Details for - - tetratricopeptide repeat domain 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235330

Tuberculist Genomic Region

236573 guanylate-binding protein 9

Details for - - guanylate-binding protein 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236573

Tuberculist Genomic Region

243813 leukocyte receptor cluster (LRC) member 9

Details for - - leukocyte receptor cluster (LRC) member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243813

Tuberculist Genomic Region

244183 tripartite motif-containing 30B

Details for - - tripartite motif-containing 30B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244183

Tuberculist Genomic Region

327957 SLP adaptor and CSK interacting membrane protein

Details for RP23-326P7.14-001 - SLP adaptor and CSK interacting membrane protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327957

Tuberculist Genomic Region

328830 RIKEN cDNA A530064D06 gene

Details for - - RIKEN cDNA A530064D06 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 328830

Tuberculist Genomic Region

381668 fibrosin-like 1

Details for - - fibrosin-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381668

Tuberculist Genomic Region

60361 membrane-spanning 4-domains, subfamily A, member 4B

Details for - - membrane-spanning 4-domains, subfamily A, member 4B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60361

Tuberculist Genomic Region

60504 interleukin 21 receptor

Details for - - interleukin 21 receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60504

Tuberculist Genomic Region

68742 transmembrane protein 219

Details for - - transmembrane protein 219

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68742

Tuberculist Genomic Region

71279 solute carrier family 29 (nucleoside transporters), member 3

Details for - - solute carrier family 29 (nucleoside transporters), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71279

Tuberculist Genomic Region

80861 DEXH (Asp-Glu-X-His) box polypeptide 58

Details for RP23-390D17.5 - DEXH (Asp-Glu-X-His) box polypeptide 58

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80861

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRF9_IRF_full_trimeric_15_1 0.28125 0.0000206

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000025 TWNTTTCNNTTT IRF1_MA0050.1, IRF2_MA0051.1, STAT1_MA0137.1, V$IRF1_Q6_01_M01881, V$IRF2_Q6_M01882, V$IRF_Q6_01_M00972, V$IRF_Q6_M00772, V$IRF7_01_M00453, V$IRF1_01_M00062, V$IRF1_Q6_M00747, IRF7_IRF_DBD_dimeric_14_1 0.012 TNCTNTCTCTG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.6 CCCTTG Zfp187.2 NA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.36 CGCAGA NA NA 0.54 GACGCRGA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

Add comment

Log in or register to post comments