TargetScan_203 megaCluster: 2 Residual: 0.15

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_203 2 0.15 15 0.001 0.959475 0

Members

Displaying 1 - 27 of 27
17130 SMAD family member 6

Details for - - SMAD family member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17130

Tuberculist Genomic Region

246728 2'-5' oligoadenylate synthetase 2

Details for - - 2'-5' oligoadenylate synthetase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 246728

Tuberculist Genomic Region

319487 RIKEN cDNA A230028O05 gene

Details for - - RIKEN cDNA A230028O05 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 319487

Tuberculist Genomic Region

545384 cDNA sequence BC094916

Details for - - cDNA sequence BC094916

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 545384

Tuberculist Genomic Region

56501 E74-like factor 4 (ets domain transcription factor)

Details for RP23-260P5.2 - E74-like factor 4 (ets domain transcription factor)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56501

Tuberculist Genomic Region

100503498 predicted gene, 16675

Details for - - predicted gene, 16675

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503498

Tuberculist Genomic Region

108673 coiled-coil domain containing 86

Details for MNCb-4327 - coiled-coil domain containing 86

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108673

Tuberculist Genomic Region

121021 chondroitin sulfate proteoglycan 4

Details for - - chondroitin sulfate proteoglycan 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 121021

Tuberculist Genomic Region

12494 CD38 antigen

Details for - - CD38 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12494

Tuberculist Genomic Region

14538 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme

Details for - - glucosaminyl (N-acetyl) transferase 2, I-branching enzyme

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14538

Tuberculist Genomic Region

15439 haptoglobin

Details for - - haptoglobin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15439

Tuberculist Genomic Region

17472 guanylate binding protein 4

Details for - - guanylate binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17472

Tuberculist Genomic Region

20846 signal transducer and activator of transcription 1

Details for - - signal transducer and activator of transcription 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20846

Tuberculist Genomic Region

209387 tripartite motif-containing 30D

Details for - - tripartite motif-containing 30D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209387

Tuberculist Genomic Region

21897 toll-like receptor 1

Details for - - toll-like receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21897

Tuberculist Genomic Region

236312 pyrin and HIN domain family, member 1

Details for - - pyrin and HIN domain family, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236312

Tuberculist Genomic Region

327978 schlafen 5

Details for RP23-392I13.5 - schlafen 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327978

Tuberculist Genomic Region

381287 RIKEN cDNA A530032D15Rik gene

Details for - - RIKEN cDNA A530032D15Rik gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381287

Tuberculist Genomic Region

432555 predicted gene 5431

Details for RP23-14F5.8 - predicted gene 5431

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 432555

Tuberculist Genomic Region

50934 solute carrier family 7 (cationic amino acid transporter, y+ system), member 8

Details for - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50934

Tuberculist Genomic Region

56066 chemokine (C-X-C motif) ligand 11

Details for - - chemokine (C-X-C motif) ligand 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56066

Tuberculist Genomic Region

60440 interferon inducible GTPase 1

Details for - - interferon inducible GTPase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60440

Tuberculist Genomic Region

631323 predicted gene 12250

Details for - - predicted gene 12250

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 631323

Tuberculist Genomic Region

65112 prostate transmembrane protein, androgen induced 1

Details for RP23-412O4.1 - prostate transmembrane protein, androgen induced 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65112

Tuberculist Genomic Region

69721 NFKB inhibitor interacting Ras-like protein 1

Details for RP23-205G15.2 - NFKB inhibitor interacting Ras-like protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69721

Tuberculist Genomic Region

74030 Ras and Rab interactor 2

Details for RP23-125A1.3 - Ras and Rab interactor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74030

Tuberculist Genomic Region

667370 RIKEN cDNA I830012O16 gene

Details for - - RIKEN cDNA I830012O16 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 667370

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Isgf3g.1 0.32 0.0000000519

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
2.1e-19 TTTNNTTTTCT NA 0.00000031 TTTNAARAAAGA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.66 AACTCC NA 0.85 CTCTGCTG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.34 GATATC NA NA 0.61 TATCANGA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-3471 0.391304 0.0000418

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