TargetScan_217 megaCluster: 3 Residual: 0.21 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_217	3	0.21	15	0	0.920299	0

Members

Displaying 1 - 25 of 25

100040260 predicted pseudogene 1862 Details for - - predicted pseudogene 1862 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100040260 Tuberculist Genomic Region	100434 solute carrier family 44, member 1 Details for RP23-20E10.4 - solute carrier family 44, member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100434 Tuberculist Genomic Region
109711 actinin, alpha 1 Details for - - actinin, alpha 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109711 Tuberculist Genomic Region	12642 cholesterol 25-hydroxylase Details for - - cholesterol 25-hydroxylase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12642 Tuberculist Genomic Region
12914 CREB binding protein Details for - - CREB binding protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12914 Tuberculist Genomic Region	13660 EH-domain containing 1 Details for - - EH-domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13660 Tuberculist Genomic Region
14011 ets variant gene 6 (TEL oncogene) Details for - - ets variant gene 6 (TEL oncogene) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14011 Tuberculist Genomic Region	15902 inhibitor of DNA binding 2 Details for - - inhibitor of DNA binding 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15902 Tuberculist Genomic Region
16449 jagged 1 Details for RP23-173O12.3 - jagged 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16449 Tuberculist Genomic Region	20482 SKI-like Details for - - SKI-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20482 Tuberculist Genomic Region
21887 transducin-like enhancer of split 3, homolog of Drosophila E(spl) Details for - - transducin-like enhancer of split 3, homolog of Drosophila E(spl) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21887 Tuberculist Genomic Region	22234 UDP-glucose ceramide glucosyltransferase Details for RP23-57N22.4 - UDP-glucose ceramide glucosyltransferase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22234 Tuberculist Genomic Region
269593 leucine zipper protein 1 Details for RP23-426N4.1 - leucine zipper protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269593 Tuberculist Genomic Region	327987 mediator complex subunit 13 Details for RP23-50E4.3 - mediator complex subunit 13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 327987 Tuberculist Genomic Region
328365 zinc finger, MIZ-type containing 1 Details for - - zinc finger, MIZ-type containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 328365 Tuberculist Genomic Region	330256 predicted gene, 20559 Details for - - predicted gene, 20559 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 330256 Tuberculist Genomic Region
55935 formin binding protein 4 Details for RP23-322I11.2 - formin binding protein 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 55935 Tuberculist Genomic Region	59043 WD repeat and SOCS box-containing 2 Details for - - WD repeat and SOCS box-containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 59043 Tuberculist Genomic Region
66058 transmembrane protein 176A Details for - - transmembrane protein 176A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66058 Tuberculist Genomic Region	67579 cytoplasmic polyadenylation element binding protein 4 Details for RP23-186D6.1 - cytoplasmic polyadenylation element binding protein 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67579 Tuberculist Genomic Region
73998 hect domain and RLD 3 Details for - - hect domain and RLD 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73998 Tuberculist Genomic Region	74007 BTB (POZ) domain containing 11 Details for - - BTB (POZ) domain containing 11 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74007 Tuberculist Genomic Region
791405 predicted gene 10002 Details for - - predicted gene 10002 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 791405 Tuberculist Genomic Region	56619 C-type lectin domain family 4, member e Details for - - C-type lectin domain family 4, member e GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56619 Tuberculist Genomic Region
80719 immunoglobulin superfamily, member 6 Details for - - immunoglobulin superfamily, member 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80719 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
Zfp281.2, V_SP1_Q6_01_M00931, SP1_MA0079.2, V_SP1_03_M02281, V_MAZ_Q6_M00649, V_MAZ_Q6_01_M02023, V_CKROX_Q2_M01175, V_CTCF_02_M01259, V_CTCF_01_M01200, V_AP2BETA_Q3_M01858, V_ZFP281_01_M01597, V_SP1_Q2_01_M00933, V_AP2_Q6_01_M00915, V_SP1_Q4_01_M00932	1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.16	ARAAAGGAANAA	NA	5000	ATATTATAWATC	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.15	ACCGCG	NA	1.22	GCGCGNNC	Zfp161.1, E2F2.1, E2F3.1, Zfp161.2

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.61	GTTGCG	NA	NA	0.72	ATTGTGAT	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
mmu-miR-539	0.9	0.0000179

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-1958	0.714286	0.00000265

Add comment

Log in or register to post comments