TargetScan_221 megaCluster: 4 Residual: 0.23 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_221	4	0.23	15	0	0.899436	0

Members

Displaying 1 - 32 of 32

108927 peptidylprolyl isomerase F (cyclophilin F) Details for - - peptidylprolyl isomerase F (cyclophilin F) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105675 Tuberculist Genomic Region	109624 lipoma HMGIC fusion partner Details for - - lipoma HMGIC fusion partner GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108927 Tuberculist Genomic Region
11773 caldesmon 1 Details for - - caldesmon 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109624 Tuberculist Genomic Region	14701 adaptor-related protein complex 2, mu 1 subunit Details for - - adaptor-related protein complex 2, mu 1 subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11773 Tuberculist Genomic Region
14735 guanine nucleotide binding protein (G protein), gamma 12 Details for - - guanine nucleotide binding protein (G protein), gamma 12 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14701 Tuberculist Genomic Region	17999 glypican 4 Details for RP23-309D15.3 - glypican 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14735 Tuberculist Genomic Region
18073 neural precursor cell expressed, developmentally down-regulated 4 Details for - - neural precursor cell expressed, developmentally down-regulated 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17999 Tuberculist Genomic Region	18987 nidogen 1 Details for - - nidogen 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18073 Tuberculist Genomic Region
192216 POU domain, class 2, transcription factor 2 Details for - - POU domain, class 2, transcription factor 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18987 Tuberculist Genomic Region	20222 transmembrane protein 47 Details for RP23-382D17.1 - transmembrane protein 47 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 192216 Tuberculist Genomic Region
20239 splicing factor 3a, subunit 2 Details for - - splicing factor 3a, subunit 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20222 Tuberculist Genomic Region	20321 ataxin 2 Details for - - ataxin 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20239 Tuberculist Genomic Region
20401 ferric-chelate reductase 1 Details for - - ferric-chelate reductase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20321 Tuberculist Genomic Region	20583 SH3-domain binding protein 1 Details for AL592169.1 - SH3-domain binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20401 Tuberculist Genomic Region
210925 snail homolog 2 (Drosophila) Details for - - snail homolog 2 (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20583 Tuberculist Genomic Region	212127 integrator complex subunit 9 Details for - - integrator complex subunit 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 210925 Tuberculist Genomic Region
218952 proline and serine rich 1 Details for - - proline and serine rich 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 212127 Tuberculist Genomic Region	227937 fermitin family homolog 2 (Drosophila) Details for RP23-359O5.1 - fermitin family homolog 2 (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218952 Tuberculist Genomic Region
229542 plakophilin 4 Details for RP23-311G5.1 - plakophilin 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227937 Tuberculist Genomic Region	233871 GATA zinc finger domain containing 2B Details for - - GATA zinc finger domain containing 2B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229542 Tuberculist Genomic Region
258712 ataxin 2-like Details for - - ataxin 2-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 233871 Tuberculist Genomic Region	269003 olfactory receptor 433 Details for - - olfactory receptor 433 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 258712 Tuberculist Genomic Region
52915 Sin3A associated protein Details for - - Sin3A associated protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269003 Tuberculist Genomic Region	546695 zinc finger, MIZ-type containing 2 Details for RP23-198N14.8 - zinc finger, MIZ-type containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52915 Tuberculist Genomic Region
57261 ribosomal protein L12 pseudogene Details for - - ribosomal protein L12 pseudogene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 546695 Tuberculist Genomic Region	66569 bromodomain containing 4 Details for RP24-236O3.1 - bromodomain containing 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 57261 Tuberculist Genomic Region
67956 glycerophosphodiester phosphodiesterase domain containing 1 Details for RP23-352L3.1 - glycerophosphodiester phosphodiesterase domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66569 Tuberculist Genomic Region	69188 SET domain containing (lysine methyltransferase) 8 Details for - - SET domain containing (lysine methyltransferase) 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67956 Tuberculist Genomic Region
70093 lysine (K)-specific methyltransferase 2E Details for - - lysine (K)-specific methyltransferase 2E GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69188 Tuberculist Genomic Region	74761 ubiquitin-conjugating enzyme E2Q (putative) 1 Details for - - ubiquitin-conjugating enzyme E2Q (putative) 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70093 Tuberculist Genomic Region
94112 matrix-remodelling associated 8 Details for RP23-242K15.14-001 - matrix-remodelling associated 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74761 Tuberculist Genomic Region	Details for - - mediator complex subunit 15 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 94112 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
PROP1_homeodomain_full_dimeric_11_1	0.129032	0.00000224

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
110	CCCCWCCCCMSC	SP1_MA0079.2, Klf4_MA0039.2, V$ZFP281_01_M01597, V$UF1H3BETA_Q6_M01068, V$SP1_Q2_01_M00933, V$SP1_03_M02281, V$KLF15_Q2_M01714, V$SP1_02_M01303, V$SP4_Q5_M01273, V$SP1_Q4_01_M00932, V$SP1_Q6_M00196, V$SP1_Q6_01_M00931, V$ZFP281_04_M02831, V$MAZ_Q6_01_M02023, V$GC_01_M00255, V$ZBP89_Q4_M01816, V$CKROX_Q2_M01175, V$EGR1_Q6_M01873, V$ZNF219_01_M01122, V$MAZR_01_M00491, V$BCL6B_04_M02844, V$EGR1_06_M02744, V$ETF_Q6_M00695, V$SP1SP3_Q4_M01219, V$GKLF_02_M01588, V$ZFP740_03_M02834, V$MAZ_Q6_M00649, V$FKLF_Q5_M01837, V$CACD_01_M01113, V$ZFP410_04_M02936, V$KROX_Q6_M00982, V$WT1_Q6_01_M02036, V$KLF7_03_M02773, V$AML2_Q3_M01814, V$BTEB3_Q5_M01865, V$NFE4_Q5_M02105, V$CACBINDINGPROTEIN_Q6_M00720, V$EKLF_Q5_M01874, V$SP1_01_M00008, V$MZF1_01_M00083, V$MZF1_Q5_M01733, Zfp281.2, Bcl6b.2, Egr1.1, Zfp740.1, Zfp410.1, Klf7.1, Ascl2.2, Sox13.2, SP1_C2H2_DBD_monomeric_11_1, ZNF740_C2H2_full_monomeric_10_1	3.4	TTCCNTTTCCT	STAT1_MA0137.1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.23	CGMCGC	NA	1.31	CGNCGCCT	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.65	AAGTACCC	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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