TargetScan_225 megaCluster: 1 Residual: 0.37

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_225 1 0.37 14 0 0.729059 0.391

Members

Displaying 1 - 22 of 22
100217414 small Cajal body-specific RNA 3A

Details for - - small Cajal body-specific RNA 3A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100217414

Tuberculist Genomic Region

100502790 predicted gene 12239

Details for - - predicted gene 12239

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100502790

Tuberculist Genomic Region

105522 predicted gene, 20235

Details for - - predicted gene, 20235

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504452

Tuberculist Genomic Region

12046 ankyrin repeat domain 28

Details for - - ankyrin repeat domain 28

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105522

Tuberculist Genomic Region

12176 B cell leukemia/lymphoma 2 related protein A1c

Details for - - B cell leukemia/lymphoma 2 related protein A1c

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12046

Tuberculist Genomic Region

12608 BCL2/adenovirus E1B interacting protein 3

Details for - - BCL2/adenovirus E1B interacting protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12176

Tuberculist Genomic Region

14130 CCAAT/enhancer binding protein (C/EBP), beta

Details for RP24-151H6.1 - CCAAT/enhancer binding protein (C/EBP), beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12608

Tuberculist Genomic Region

14283 Fc receptor, IgG, low affinity IIb

Details for - - Fc receptor, IgG, low affinity IIb

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14130

Tuberculist Genomic Region

14676 fos-like antigen 1

Details for - - fos-like antigen 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14283

Tuberculist Genomic Region

16154 guanine nucleotide binding protein, alpha 15

Details for - - guanine nucleotide binding protein, alpha 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14676

Tuberculist Genomic Region

216783 interleukin 10 receptor, alpha

Details for - - interleukin 10 receptor, alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16154

Tuberculist Genomic Region

258350 olfactory receptor 320

Details for RP23-128D9.8 - olfactory receptor 320

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216783

Tuberculist Genomic Region

319454 olfactory receptor 706

Details for - - olfactory receptor 706

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258350

Tuberculist Genomic Region

53374 regulatory associated protein of MTOR, complex 1, opposite strand

Details for - - regulatory associated protein of MTOR, complex 1, opposite strand

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 319454

Tuberculist Genomic Region

55948 carbohydrate (chondroitin 6/keratan) sulfotransferase 3

Details for - - carbohydrate (chondroitin 6/keratan) sulfotransferase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53374

Tuberculist Genomic Region

58217 stratifin

Details for RP23-137L22.11-001 - stratifin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 55948

Tuberculist Genomic Region

619308 triggering receptor expressed on myeloid cells 1

Details for - - triggering receptor expressed on myeloid cells 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58217

Tuberculist Genomic Region

626534 RIKEN cDNA F830208F22 gene

Details for - - RIKEN cDNA F830208F22 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 619308

Tuberculist Genomic Region

68949 tubulin, alpha 1C pseudogene

Details for - - tubulin, alpha 1C pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 626534

Tuberculist Genomic Region

69543 RIKEN cDNA 1500012F01 gene

Details for - - RIKEN cDNA 1500012F01 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68949

Tuberculist Genomic Region

724064 calpain, small subunit 2

Details for - - calpain, small subunit 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69543

Tuberculist Genomic Region

Details for - - microRNA 148b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 724064

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ZTA_Q2_M00711 0.538462 0.0000487

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
4400 CTCCNCNTCCTC NA 11000 AATAATTTTCA Prrx2_MA0075.1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.96 CACCGA NA 1.54 CCTCCGTG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
1 GCGGGTTA NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-673-5p, mmu-miR-27b, mmu-miR-27a 1 0

3p UTR TargetScan

miRNAs percTargets pValue
NA

Add comment

Log in or register to post comments