TargetScan_25 megaCluster: 8 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_25 8 0.21 15 0 0.925359 0

Members

Displaying 1 - 52 of 52
107769 transmembrane 6 superfamily member 1

Details for - - transmembrane 6 superfamily member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107769

Tuberculist Genomic Region

108160 family with sequence similarity 50, member A

Details for - - family with sequence similarity 50, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108160

Tuberculist Genomic Region

12068 blocked early in transport 1 homolog (S. cerevisiae)

Details for - - blocked early in transport 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12068

Tuberculist Genomic Region

12626 centrin 3

Details for - - centrin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12626

Tuberculist Genomic Region

140483 histamine N-methyltransferase

Details for RP23-263E15.1 - histamine N-methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140483

Tuberculist Genomic Region

14790 gene rich cluster, C10 gene

Details for - - gene rich cluster, C10 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14790

Tuberculist Genomic Region

15115 histidyl-tRNA synthetase

Details for - - histidyl-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15115

Tuberculist Genomic Region

224694 zinc finger protein 81

Details for - - zinc finger protein 81

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224694

Tuberculist Genomic Region

225283 regulation of nuclear pre-mRNA domain containing 1A

Details for - - regulation of nuclear pre-mRNA domain containing 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225283

Tuberculist Genomic Region

243025 transmembrane protein 156

Details for - - transmembrane protein 156

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243025

Tuberculist Genomic Region

244556 zinc finger protein 791

Details for - - zinc finger protein 791

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244556

Tuberculist Genomic Region

245828 trafficking protein particle complex 1

Details for RP23-26L6.10-004 - trafficking protein particle complex 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 245828

Tuberculist Genomic Region

27998 exosome component 5

Details for - - exosome component 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27998

Tuberculist Genomic Region

330503 predicted gene 5113

Details for - - predicted gene 5113

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 330503

Tuberculist Genomic Region

408062 zinc finger protein 873

Details for - - zinc finger protein 873

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 408062

Tuberculist Genomic Region

66671 cyclin H

Details for - - cyclin H

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66671

Tuberculist Genomic Region

67005 polymerase (RNA) III (DNA directed) polypeptide K

Details for RP23-322G1.6 - polymerase (RNA) III (DNA directed) polypeptide K

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67005

Tuberculist Genomic Region

67105 tranlocase of inner mitochondrial membrane 21

Details for - - tranlocase of inner mitochondrial membrane 21

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67105

Tuberculist Genomic Region

67144 leucine rich repeat containing 40

Details for - - leucine rich repeat containing 40

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67144

Tuberculist Genomic Region

68611 mitochondrial ribosomal protein L28

Details for - - mitochondrial ribosomal protein L28

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68611

Tuberculist Genomic Region

69221 RIKEN cDNA 2410006H16 gene

Details for - - RIKEN cDNA 2410006H16 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69221

Tuberculist Genomic Region

70544 transmembrane protein 242

Details for - - transmembrane protein 242

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70544

Tuberculist Genomic Region

71151 exoribonuclease 2

Details for - - exoribonuclease 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71151

Tuberculist Genomic Region

72091 small nucleolar RNA host gene (non-protein coding) 7

Details for - - small nucleolar RNA host gene (non-protein coding) 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72091

Tuberculist Genomic Region

75570 nonhomologous end-joining factor 1

Details for - - nonhomologous end-joining factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75570

Tuberculist Genomic Region

67219 mediator complex subunit 18

Details for RP23-63D8.2 - mediator complex subunit 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67219

Tuberculist Genomic Region

70681 family with sequence similarity 175, member A

Details for - - family with sequence similarity 175, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70681

Tuberculist Genomic Region

11364 acyl-Coenzyme A dehydrogenase, medium chain

Details for - - acyl-Coenzyme A dehydrogenase, medium chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11364

Tuberculist Genomic Region

12041 branched chain ketoacid dehydrogenase kinase

Details for - - branched chain ketoacid dehydrogenase kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12041

Tuberculist Genomic Region

13595 phenylalkylamine Ca2+ antagonist (emopamil) binding protein

Details for RP23-27I6.10-001 - phenylalkylamine Ca2+ antagonist (emopamil) binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13595

Tuberculist Genomic Region

16970 lymphoid-restricted membrane protein

Details for RP24-216M19.3 - lymphoid-restricted membrane protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16970

Tuberculist Genomic Region

170787 histone deacetylase 10

Details for - - histone deacetylase 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170787

Tuberculist Genomic Region

17449 malate dehydrogenase 1, NAD (soluble)

Details for RP23-198N8.1 - malate dehydrogenase 1, NAD (soluble)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17449

Tuberculist Genomic Region

18861 postmeiotic segregation increased 2 (S. cerevisiae)

Details for - - postmeiotic segregation increased 2 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18861

Tuberculist Genomic Region

20751 sepiapterin reductase

Details for - - sepiapterin reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20751

Tuberculist Genomic Region

22247 uridine monophosphate synthetase

Details for - - uridine monophosphate synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22247

Tuberculist Genomic Region

227095 3-hydroxyisobutyryl-Coenzyme A hydrolase

Details for - - 3-hydroxyisobutyryl-Coenzyme A hydrolase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227095

Tuberculist Genomic Region

237336 TATA box binding protein-like 1

Details for - - TATA box binding protein-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237336

Tuberculist Genomic Region

238831 peptidylprolyl isomerase domain and WD repeat containing 1

Details for - - peptidylprolyl isomerase domain and WD repeat containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 238831

Tuberculist Genomic Region

24060 solute carrier family 35 (CMP-sialic acid transporter), member 1

Details for RP23-76M15.2 - solute carrier family 35 (CMP-sialic acid transporter), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24060

Tuberculist Genomic Region

50773 5',3'-nucleotidase, cytosolic

Details for RP23-392H19.7 - 5',3'-nucleotidase, cytosolic

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50773

Tuberculist Genomic Region

51798 enoyl coenzyme A hydratase 1, peroxisomal

Details for - - enoyl coenzyme A hydratase 1, peroxisomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 51798

Tuberculist Genomic Region

53893 nudix (nucleoside diphosphate linked moiety X)-type motif 5

Details for RP23-307E15.2 - nudix (nucleoside diphosphate linked moiety X)-type motif 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53893

Tuberculist Genomic Region

641376 translocase of outer mitochondrial membrane 40 homolog-like (yeast)

Details for - - translocase of outer mitochondrial membrane 40 homolog-like (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 641376

Tuberculist Genomic Region

66377 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1

Details for - - NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66377

Tuberculist Genomic Region

66945 succinate dehydrogenase complex, subunit A, flavoprotein (Fp)

Details for - - succinate dehydrogenase complex, subunit A, flavoprotein (Fp)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66945

Tuberculist Genomic Region

70152 methyltransferase like 7A1

Details for - - methyltransferase like 7A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70152

Tuberculist Genomic Region

72050 KDEL (Lys-Asp-Glu-Leu) containing 1

Details for - - KDEL (Lys-Asp-Glu-Leu) containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72050

Tuberculist Genomic Region

75597 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75597

Tuberculist Genomic Region

170718 isocitrate dehydrogenase 3 (NAD+) beta

Details for RP23-20A6.5 - isocitrate dehydrogenase 3 (NAD+) beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170718

Tuberculist Genomic Region

17692 male-specific lethal 3 homolog (Drosophila)

Details for RP23-125I7.1 - male-specific lethal 3 homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17692

Tuberculist Genomic Region

68058 chromodomain helicase DNA binding protein 1-like

Details for - - chromodomain helicase DNA binding protein 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68058

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ETV3_02_M02068 0.346939 0.00000485

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000000000011 AAAMAAANAAA NA 0.54 AAAATWAAAWT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.08 CGTCCG MIZF_MA0131.1, V$MIZF_01_M01182 1.07 ACGTTCGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.38 CGGCGT NA NA 0.46 NKGTAGTA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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