TargetScan_27 megaCluster: 10 Residual: 0.19

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_27 10 0.19 15 0 0.936747 0

Members

Displaying 1 - 32 of 32
101602 expressed sequence AI467606

Details for - - expressed sequence AI467606

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101602

Tuberculist Genomic Region

108671 DnaJ (Hsp40) homolog, subfamily C, member 9

Details for - - DnaJ (Hsp40) homolog, subfamily C, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108671

Tuberculist Genomic Region

109079 selenophosphate synthetase 1

Details for RP23-198G1.3 - selenophosphate synthetase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109079

Tuberculist Genomic Region

12036 branched chain aminotransferase 2, mitochondrial

Details for - - branched chain aminotransferase 2, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12036

Tuberculist Genomic Region

12721 coronin, actin binding protein 1A

Details for - - coronin, actin binding protein 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12721

Tuberculist Genomic Region

13144 death-associated protein kinase 3

Details for - - death-associated protein kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13144

Tuberculist Genomic Region

15191 hepatoma-derived growth factor

Details for - - hepatoma-derived growth factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15191

Tuberculist Genomic Region

17120 MAD1 mitotic arrest deficient 1-like 1

Details for - - MAD1 mitotic arrest deficient 1-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17120

Tuberculist Genomic Region

17283 multiple endocrine neoplasia 1

Details for - - multiple endocrine neoplasia 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17283

Tuberculist Genomic Region

17688 mutS homolog 6 (E. coli)

Details for - - mutS homolog 6 (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17688

Tuberculist Genomic Region

19060 protein phosphatase 5, catalytic subunit

Details for - - protein phosphatase 5, catalytic subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19060

Tuberculist Genomic Region

195040 transmembrane protein 199

Details for RP23-399H5.5 - transmembrane protein 199

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 195040

Tuberculist Genomic Region

227619 mannosidase, alpha, class 1B, member 1

Details for RP23-47P18.1 - mannosidase, alpha, class 1B, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227619

Tuberculist Genomic Region

56424 STIP1 homology and U-Box containing protein 1

Details for - - STIP1 homology and U-Box containing protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56424

Tuberculist Genomic Region

56427 tubulin, delta 1

Details for RP23-467J12.3 - tubulin, delta 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56427

Tuberculist Genomic Region

57314 negative elongation factor complex member C/D, Th1l

Details for RP23-59M10.1 - negative elongation factor complex member C/D, Th1l

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57314

Tuberculist Genomic Region

60364 downstream neighbor of SON

Details for - - downstream neighbor of SON

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60364

Tuberculist Genomic Region

641376 translocase of outer mitochondrial membrane 40 homolog-like (yeast)

Details for - - translocase of outer mitochondrial membrane 40 homolog-like (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 641376

Tuberculist Genomic Region

67150 ring finger protein 141

Details for - - ring finger protein 141

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67150

Tuberculist Genomic Region

67905 protein phosphatase 1M

Details for - - protein phosphatase 1M

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67905

Tuberculist Genomic Region

67936 WD repeat domain 55

Details for - - WD repeat domain 55

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67936

Tuberculist Genomic Region

70099 structural maintenance of chromosomes 4

Details for - - structural maintenance of chromosomes 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70099

Tuberculist Genomic Region

73327 protease-associated domain containing 1

Details for - - protease-associated domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73327

Tuberculist Genomic Region

74360 centrosomal protein 57

Details for RP23-133A3.3 - centrosomal protein 57

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74360

Tuberculist Genomic Region

76832 hydrolethalus syndrome 1

Details for - - hydrolethalus syndrome 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76832

Tuberculist Genomic Region

192678 Ras association (RalGDS/AF-6) domain family member 3

Details for - - Ras association (RalGDS/AF-6) domain family member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 192678

Tuberculist Genomic Region

227094 transmembrane protein 194B

Details for - - transmembrane protein 194B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227094

Tuberculist Genomic Region

232337 zinc finger protein 637

Details for - - zinc finger protein 637

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 232337

Tuberculist Genomic Region

52592 breast cancer metastasis-suppressor 1-like

Details for - - breast cancer metastasis-suppressor 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52592

Tuberculist Genomic Region

14228 FK506 binding protein 4

Details for - - FK506 binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14228

Tuberculist Genomic Region

17252 retinol dehydrogenase 11

Details for - - retinol dehydrogenase 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17252

Tuberculist Genomic Region

52504 centromere protein O

Details for RP23-6C18.1 - centromere protein O

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52504

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_SP1_Q2_01_M00933 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000051 AAMAAANAAAA NA 770000 AACAACCAATTT Barhl2.1, Barhl1.1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.4 CGCCGT NA 1.37 NNCGGCGC V$E2F4_04_M02847, V$E2F2_04_M02846, E2F2.2, E2F3.2, E2F2.1, E2F3.1

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.78 CCNGAG NA NA 0.64 ATCCCCNG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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