TargetScan_32 megaCluster: 2 Residual: 0.26

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_32 2 0.26 14 0 0.852015 0

Members

Displaying 1 - 45 of 45
101187 poly (ADP-ribose) polymerase family, member 11

Details for - - poly (ADP-ribose) polymerase family, member 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101187

Tuberculist Genomic Region

110751 a disintegrin and metallopeptidase domain 33

Details for RP23-228H14.4 - a disintegrin and metallopeptidase domain 33

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110751

Tuberculist Genomic Region

112419 RIKEN cDNA 2010002M12 gene

Details for - - RIKEN cDNA 2010002M12 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 112419

Tuberculist Genomic Region

11610 angiotensin II, type I receptor-associated protein

Details for RP23-139J21.6 - angiotensin II, type I receptor-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11610

Tuberculist Genomic Region

11758 peroxiredoxin 6

Details for - - peroxiredoxin 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11758

Tuberculist Genomic Region

12894 carnitine palmitoyltransferase 1a, liver

Details for - - carnitine palmitoyltransferase 1a, liver

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12894

Tuberculist Genomic Region

13805 endoglin

Details for RP23-17P12.4 - endoglin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13805

Tuberculist Genomic Region

14058 coagulation factor X

Details for - - coagulation factor X

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14058

Tuberculist Genomic Region

14089 fibroblast activation protein

Details for RP23-343C17.4 - fibroblast activation protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14089

Tuberculist Genomic Region

14659 glutamine repeat protein 1

Details for - - glutamine repeat protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14659

Tuberculist Genomic Region

17454 Moloney leukemia virus 10

Details for - - Moloney leukemia virus 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17454

Tuberculist Genomic Region

17769 5,10-methylenetetrahydrofolate reductase

Details for RP23-139J21.2 - 5,10-methylenetetrahydrofolate reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17769

Tuberculist Genomic Region

17954 nucleosome assembly protein 1-like 2

Details for - - nucleosome assembly protein 1-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17954

Tuberculist Genomic Region

19419 RAS guanyl releasing protein 1

Details for RP23-73I19.3 - RAS guanyl releasing protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19419

Tuberculist Genomic Region

20167 reticulon 2 (Z-band associated protein)

Details for - - reticulon 2 (Z-band associated protein)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20167

Tuberculist Genomic Region

208043 SET domain containing 1B

Details for - - SET domain containing 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208043

Tuberculist Genomic Region

20910 syntaxin binding protein 1

Details for RP23-17P12.13-002 - syntaxin binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20910

Tuberculist Genomic Region

21354 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)

Details for - - transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21354

Tuberculist Genomic Region

214639 RIKEN cDNA 4930486L24 gene

Details for - - RIKEN cDNA 4930486L24 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214639

Tuberculist Genomic Region

219131 PHD finger protein 11A

Details for - - PHD finger protein 11A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 219131

Tuberculist Genomic Region

21954 troponin I, cardiac 3

Details for - - troponin I, cardiac 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21954

Tuberculist Genomic Region

225845 phospholipase A2, group XVI

Details for - - phospholipase A2, group XVI

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225845

Tuberculist Genomic Region

227671 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

Details for RP23-430H1.5 - globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227671

Tuberculist Genomic Region

235315 ring finger protein 214

Details for - - ring finger protein 214

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235315

Tuberculist Genomic Region

23797 thymoma viral proto-oncogene 3

Details for - - thymoma viral proto-oncogene 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23797

Tuberculist Genomic Region

269346 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2

Details for RP23-173H17.7 - solute carrier family 28 (sodium-coupled nucleoside transporter), member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269346

Tuberculist Genomic Region

387248 microRNA let7e

Details for - - microRNA let7e

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387248

Tuberculist Genomic Region

404336 olfactory receptor 1380

Details for RP23-58E13.7 - olfactory receptor 1380

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 404336

Tuberculist Genomic Region

60504 interleukin 21 receptor

Details for - - interleukin 21 receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60504

Tuberculist Genomic Region

622459 predicted gene 12216

Details for RP23-303F24.3 - predicted gene 12216

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 622459

Tuberculist Genomic Region

67809 regulator of microtubule dynamics 3

Details for RP23-15I21.5 - regulator of microtubule dynamics 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67809

Tuberculist Genomic Region

69028 MIT, microtubule interacting and transport, domain containing 1

Details for - - MIT, microtubule interacting and transport, domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69028

Tuberculist Genomic Region

69368 WD repeat and FYVE domain containing 1

Details for - - WD repeat and FYVE domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69368

Tuberculist Genomic Region

71086 RIKEN cDNA 4933412E12 gene

Details for - - RIKEN cDNA 4933412E12 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71086

Tuberculist Genomic Region

71684 RNA binding motif protein 43

Details for RP23-332K7.2 - RNA binding motif protein 43

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71684

Tuberculist Genomic Region

74735 tripartite motif-containing 14

Details for RP23-117B19.5 - tripartite motif-containing 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74735

Tuberculist Genomic Region

76624 RIKEN cDNA 1700099I09 gene

Details for - - RIKEN cDNA 1700099I09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76624

Tuberculist Genomic Region

93842 immunoglobulin superfamily, member 9

Details for - - immunoglobulin superfamily, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 93842

Tuberculist Genomic Region

109032 Sp110 nuclear body protein

Details for - - Sp110 nuclear body protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109032

Tuberculist Genomic Region

213783 pleckstrin homology domain containing, family G (with RhoGef domain) member 1

Details for - - pleckstrin homology domain containing, family G (with RhoGef domain) member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213783

Tuberculist Genomic Region

235587 poly (ADP-ribose) polymerase family, member 3

Details for - - poly (ADP-ribose) polymerase family, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235587

Tuberculist Genomic Region

328309 predicted gene 9776

Details for - - predicted gene 9776

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 328309

Tuberculist Genomic Region

72075 opioid growth factor receptor

Details for RP23-74K21.5 - opioid growth factor receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72075

Tuberculist Genomic Region

74153 ubiquitin-like modifier activating enzyme 7

Details for - - ubiquitin-like modifier activating enzyme 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74153

Tuberculist Genomic Region

69440 DENN/MADD domain containing 6B

Details for - - DENN/MADD domain containing 6B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69440

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRF1_MA0050.1 0.333333 0.00000206

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.78 TGCGGT RUNX2_RUNX_DBD_dimeric_16_1, RUNX3_RUNX_DBD_dimeric_16_1, RUNX2_RUNX_DBD_monomeric_9_1 0.74 CCGNAGGG

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.58 AGCGCG NA NA 0.68 CGCGCGTT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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