TargetScan_35 megaCluster: 3 Residual: 0.23

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_35 3 0.23 11 0.013 0.701985 0.639

Members

Displaying 1 - 30 of 30
104836 Casitas B-lineage lymphoma-like 1

Details for - - Casitas B-lineage lymphoma-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104836

Tuberculist Genomic Region

109361 RIKEN cDNA D730005E14 gene

Details for - - RIKEN cDNA D730005E14 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109361

Tuberculist Genomic Region

12816 collagen, type XII, alpha 1

Details for - - collagen, type XII, alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12816

Tuberculist Genomic Region

12984 colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)

Details for - - colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12984

Tuberculist Genomic Region

13654 early growth response 2

Details for - - early growth response 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13654

Tuberculist Genomic Region

14579 GTP binding protein (gene overexpressed in skeletal muscle)

Details for RP23-54P14.1 - GTP binding protein (gene overexpressed in skeletal muscle)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14579

Tuberculist Genomic Region

16175 interleukin 1 alpha

Details for RP23-160G19.8 - interleukin 1 alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16175

Tuberculist Genomic Region

17087 lymphocyte antigen 96

Details for - - lymphocyte antigen 96

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17087

Tuberculist Genomic Region

19157 cytohesin 1

Details for RP23-28C17.3 - cytohesin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19157

Tuberculist Genomic Region

192216 transmembrane protein 47

Details for RP23-382D17.1 - transmembrane protein 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 192216

Tuberculist Genomic Region

20222 splicing factor 3a, subunit 2

Details for - - splicing factor 3a, subunit 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20222

Tuberculist Genomic Region

20540 solute carrier family 7 (cationic amino acid transporter, y+ system), member 7

Details for - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20540

Tuberculist Genomic Region

21810 transforming growth factor, beta induced

Details for - - transforming growth factor, beta induced

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21810

Tuberculist Genomic Region

21817 transglutaminase 2, C polypeptide

Details for RP23-396G1.2 - transglutaminase 2, C polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21817

Tuberculist Genomic Region

229694 expressed sequence AI504432

Details for - - expressed sequence AI504432

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229694

Tuberculist Genomic Region

238393 serine (or cysteine) peptidase inhibitor, clade A, member 3F

Details for - - serine (or cysteine) peptidase inhibitor, clade A, member 3F

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 238393

Tuberculist Genomic Region

23882 growth arrest and DNA-damage-inducible 45 gamma

Details for - - growth arrest and DNA-damage-inducible 45 gamma

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23882

Tuberculist Genomic Region

387173 microRNA 155

Details for - - microRNA 155

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387173

Tuberculist Genomic Region

57261 bromodomain containing 4

Details for RP24-236O3.1 - bromodomain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57261

Tuberculist Genomic Region

69188 lysine (K)-specific methyltransferase 2E

Details for - - lysine (K)-specific methyltransferase 2E

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69188

Tuberculist Genomic Region

70425 casein kinase 1, gamma 3

Details for - - casein kinase 1, gamma 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70425

Tuberculist Genomic Region

71712 DNA-damage regulated autophagy modulator 1

Details for - - DNA-damage regulated autophagy modulator 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71712

Tuberculist Genomic Region

72446 proline rich 5 like

Details for RP23-325I3.4 - proline rich 5 like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72446

Tuberculist Genomic Region

75089 UHRF1 (ICBP90) binding protein 1-like

Details for - - UHRF1 (ICBP90) binding protein 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75089

Tuberculist Genomic Region

93730 leucine zipper transcription factor-like 1

Details for - - leucine zipper transcription factor-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 93730

Tuberculist Genomic Region

11468 actin, gamma 2, smooth muscle, enteric

Details for - - actin, gamma 2, smooth muscle, enteric

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11468

Tuberculist Genomic Region

23880 FYN binding protein

Details for - - FYN binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23880

Tuberculist Genomic Region

54635 platelet-derived growth factor, C polypeptide

Details for - - platelet-derived growth factor, C polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54635

Tuberculist Genomic Region

14571 glycerol phosphate dehydrogenase 2, mitochondrial

Details for - - glycerol phosphate dehydrogenase 2, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14571

Tuberculist Genomic Region

229898 guanylate binding protein 5

Details for - - guanylate binding protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229898

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00014 TTAAARAAAAW NA 1.2 RAAGGAANNAAW NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.93 AGTCCG NA 1.04 CGGCGGMN NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.51 TNGATA NA NA 0.8 GNGTCAAC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-883b-5p 0.5 0.0000367

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