TargetScan_37 megaCluster: 8 Residual: 0.18

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_37 8 0.18 15 0 0.942135 0

Members

Displaying 1 - 46 of 46
100900 HscB iron-sulfur cluster co-chaperone homolog (E. coli)

Details for - - HscB iron-sulfur cluster co-chaperone homolog (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100900

Tuberculist Genomic Region

12764 cytidine monophospho-N-acetylneuraminic acid synthetase

Details for - - cytidine monophospho-N-acetylneuraminic acid synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12764

Tuberculist Genomic Region

14385 solute carrier family 37 (glucose-6-phosphate transporter), member 4

Details for - - solute carrier family 37 (glucose-6-phosphate transporter), member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14385

Tuberculist Genomic Region

212114 NHL repeat containing 3

Details for - - NHL repeat containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212114

Tuberculist Genomic Region

213056 family with sequence similarity 126, member B

Details for - - family with sequence similarity 126, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213056

Tuberculist Genomic Region

214895 lectin, mannose-binding 2-like

Details for - - lectin, mannose-binding 2-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214895

Tuberculist Genomic Region

219022 tetratricopeptide repeat domain 5

Details for - - tetratricopeptide repeat domain 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 219022

Tuberculist Genomic Region

22718 zinc finger protein 60

Details for - - zinc finger protein 60

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22718

Tuberculist Genomic Region

228545 vacuolar protein sorting 18 (yeast)

Details for RP23-46P4.6 - vacuolar protein sorting 18 (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228545

Tuberculist Genomic Region

232536 mitochondrial ribosomal protein S35

Details for RP23-157O3.2 - mitochondrial ribosomal protein S35

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 232536

Tuberculist Genomic Region

233204 TBC1 domain family, member 17

Details for - - TBC1 domain family, member 17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233204

Tuberculist Genomic Region

234413 zinc finger protein 961

Details for - - zinc finger protein 961

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234413

Tuberculist Genomic Region

240034 zinc finger protein 760

Details for - - zinc finger protein 760

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240034

Tuberculist Genomic Region

269180 inositol polyphosphate-4-phosphatase, type I

Details for - - inositol polyphosphate-4-phosphatase, type I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269180

Tuberculist Genomic Region

53330 vesicle-associated membrane protein 4

Details for - - vesicle-associated membrane protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53330

Tuberculist Genomic Region

64291 oxysterol binding protein-like 1A

Details for - - oxysterol binding protein-like 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64291

Tuberculist Genomic Region

67826 synaptosomal-associated protein, 47

Details for RP23-378H5.4 - synaptosomal-associated protein, 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67826

Tuberculist Genomic Region

68472 transmembrane protein 126B

Details for - - transmembrane protein 126B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68472

Tuberculist Genomic Region

69478 RIKEN cDNA 2300009A05 gene

Details for - - RIKEN cDNA 2300009A05 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69478

Tuberculist Genomic Region

69807 tripartite motif-containing 32

Details for RP23-468K2.1 - tripartite motif-containing 32

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69807

Tuberculist Genomic Region

70823 HMG box domain containing 4

Details for AL603864.1 - HMG box domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70823

Tuberculist Genomic Region

72039 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)

Details for - - methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72039

Tuberculist Genomic Region

73747 RIKEN cDNA 1110034G24 gene

Details for RP23-391A14.5 - RIKEN cDNA 1110034G24 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73747

Tuberculist Genomic Region

74102 solute carrier family 35, member A5

Details for - - solute carrier family 35, member A5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74102

Tuberculist Genomic Region

74551 phosphoenolpyruvate carboxykinase 2 (mitochondrial)

Details for - - phosphoenolpyruvate carboxykinase 2 (mitochondrial)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74551

Tuberculist Genomic Region

76608 HECT domain containing 3

Details for RP23-419D6.4 - HECT domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76608

Tuberculist Genomic Region

106326 oxysterol binding protein-like 11

Details for - - oxysterol binding protein-like 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106326

Tuberculist Genomic Region

170719 oxidation resistance 1

Details for - - oxidation resistance 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170719

Tuberculist Genomic Region

20817 serine/arginine-rich protein specific kinase 2

Details for - - serine/arginine-rich protein specific kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20817

Tuberculist Genomic Region

224694 zinc finger protein 81

Details for - - zinc finger protein 81

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224694

Tuberculist Genomic Region

226539 aspartyl-tRNA synthetase 2 (mitochondrial)

Details for - - aspartyl-tRNA synthetase 2 (mitochondrial)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226539

Tuberculist Genomic Region

67144 leucine rich repeat containing 40

Details for - - leucine rich repeat containing 40

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67144

Tuberculist Genomic Region

72572 spermatogenesis associated, serine-rich 2

Details for - - spermatogenesis associated, serine-rich 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72572

Tuberculist Genomic Region

100929 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)

Details for - - tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100929

Tuberculist Genomic Region

12576 cyclin-dependent kinase inhibitor 1B

Details for - - cyclin-dependent kinase inhibitor 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12576

Tuberculist Genomic Region

17346 MAP kinase-interacting serine/threonine kinase 1

Details for RP23-374N19.2 - MAP kinase-interacting serine/threonine kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17346

Tuberculist Genomic Region

17850 methylmalonyl-Coenzyme A mutase

Details for - - methylmalonyl-Coenzyme A mutase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17850

Tuberculist Genomic Region

18640 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2

Details for - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18640

Tuberculist Genomic Region

19687 replication factor C (activator 1) 1

Details for - - replication factor C (activator 1) 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19687

Tuberculist Genomic Region

208194 endo/exonuclease (5'-3'), endonuclease G-like

Details for - - endo/exonuclease (5'-3'), endonuclease G-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208194

Tuberculist Genomic Region

217473 ankyrin repeat and MYND domain containing 2

Details for - - ankyrin repeat and MYND domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217473

Tuberculist Genomic Region

231670 F-box protein 21

Details for - - F-box protein 21

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231670

Tuberculist Genomic Region

27015 polymerase (DNA directed), kappa

Details for - - polymerase (DNA directed), kappa

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27015

Tuberculist Genomic Region

74114 carnitine O-octanoyltransferase

Details for - - carnitine O-octanoyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74114

Tuberculist Genomic Region

75415 Rho GTPase activating protein 12

Details for - - Rho GTPase activating protein 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75415

Tuberculist Genomic Region

84505 SET domain, bifurcated 1

Details for - - SET domain, bifurcated 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 84505

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ARID5A_04_M02840 0.108696 0.00000134

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00014 AATWAAAAAWAT NA 1.7 TTWAAAAMRAT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.09 GACGCG NA 1.27 CGGNNCCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.36 ATCCGT NA NA 0.43 AATAGGGA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-208b 0.162162 0.0000703

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