TargetScan_38 megaCluster: 1 Residual: 0.11 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_38	1	0.11	15	0	0.975216	0

Members

Displaying 1 - 21 of 21

13537 dual specificity phosphatase 2 Details for RP23-206D14.6 - dual specificity phosphatase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13537 Tuberculist Genomic Region	16168 interleukin 15 Details for - - interleukin 15 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16168 Tuberculist Genomic Region
20821 tripartite motif-containing 21 Details for - - tripartite motif-containing 21 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20821 Tuberculist Genomic Region	209645 BEN domain containing 7 Details for RP23-198G1.1 - BEN domain containing 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 209645 Tuberculist Genomic Region
214855 AT rich interactive domain 5A (MRF1-like) Details for - - AT rich interactive domain 5A (MRF1-like) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 214855 Tuberculist Genomic Region	218613 mesoderm induction early response 1, family member 3 Details for - - mesoderm induction early response 1, family member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218613 Tuberculist Genomic Region
22021 protein-tyrosine sulfotransferase 1 Details for - - protein-tyrosine sulfotransferase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22021 Tuberculist Genomic Region	239122 SET domain, bifurcated 2 Details for mCG_13852 - SET domain, bifurcated 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 239122 Tuberculist Genomic Region
240665 cyclin J Details for - - cyclin J GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 240665 Tuberculist Genomic Region	257632 nucleotide-binding oligomerization domain containing 2 Details for - - nucleotide-binding oligomerization domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 257632 Tuberculist Genomic Region
319448 fibronectin type III domain containing 3A Details for - - fibronectin type III domain containing 3A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 319448 Tuberculist Genomic Region	628705 PHD finger protein 11C Details for mCG_1037415 - PHD finger protein 11C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 628705 Tuberculist Genomic Region
67245 pellino 1 Details for RP23-93O11.1 - pellino 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67245 Tuberculist Genomic Region	12562 cadherin 5 Details for - - cadherin 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12562 Tuberculist Genomic Region
14265 fragile X mental retardation syndrome 1 Details for - - fragile X mental retardation syndrome 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14265 Tuberculist Genomic Region	16145 interferon gamma induced GTPase Details for RP24-499A8.4 - interferon gamma induced GTPase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16145 Tuberculist Genomic Region
17119 MAX dimerization protein 1 Details for - - MAX dimerization protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17119 Tuberculist Genomic Region	21939 CD40 antigen Details for RP23-428M13.1 - CD40 antigen GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21939 Tuberculist Genomic Region
24127 5'-3' exoribonuclease 1 Details for - - 5'-3' exoribonuclease 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 24127 Tuberculist Genomic Region	433470 expressed sequence AA467197 Details for RP23-101F14.3 - expressed sequence AA467197 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 433470 Tuberculist Genomic Region
54384 myotubularin related protein 7 Details for - - myotubularin related protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54384 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_ISGF3G_03_M02771	0.285714	0.00000245

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
13	TTTNKYTCTTTT	NA	710	TTTCWSTTTCA	STAT1_MA0137.1, IRF1_MA0050.1, IRF2_MA0051.1, V$ISRE_01_M00258, V$IRF_Q6_01_M00972, V$IRF2_Q6_M01882, V$IRF1_Q6_01_M01881, V$IRF7_Q3_M01884, V$IRF_Q6_M00772, V$ICSBP_Q6_M00699, V$IRF1_Q6_M00747, V$IRF1_01_M00062, IRF8_IRF_full_dimeric_14_1, IRF9_IRF_full_trimeric_15_1, IRF7_IRF_DBD_dimeric_14_1, IRF3_IRF_full_trimeric_21_1, IRF4_IRF_full_dimeric_15_1, PRDM1_C2H2_full_monomeric-or-dimeric_15_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.25	CGGGCA	NA	1.42	CGACGGTC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.81	ACMGAC	NA	NA	0.83	NGGAAATG	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

Add comment

Log in or register to post comments