TargetScan_46 megaCluster: 11 Residual: 0.19 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_46	11	0.19	15	0	0.932765	0

Members

Displaying 1 - 23 of 23

11883 arylsulfatase A Details for - - arylsulfatase A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11883 Tuberculist Genomic Region	13476 receptor accessory protein 5 Details for - - receptor accessory protein 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13476 Tuberculist Genomic Region
14375 X-ray repair complementing defective repair in Chinese hamster cells 6 Details for - - X-ray repair complementing defective repair in Chinese hamster cells 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14375 Tuberculist Genomic Region	14590 gamma-glutamyl hydrolase Details for RP23-259B18.3 - gamma-glutamyl hydrolase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14590 Tuberculist Genomic Region
19355 RAD1 homolog (S. pombe) Details for - - RAD1 homolog (S. pombe) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19355 Tuberculist Genomic Region	19718 replication factor C (activator 1) 2 Details for - - replication factor C (activator 1) 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19718 Tuberculist Genomic Region
217695 zinc finger, FYVE domain containing 1 Details for - - zinc finger, FYVE domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 217695 Tuberculist Genomic Region	218138 GDP-mannose 4, 6-dehydratase Details for RP23-459H16.3 - GDP-mannose 4, 6-dehydratase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218138 Tuberculist Genomic Region
21856 translocase of inner mitochondrial membrane 44 Details for - - translocase of inner mitochondrial membrane 44 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21856 Tuberculist Genomic Region	230661 testis-specific kinase 2 Details for RP23-109A3.2 - testis-specific kinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230661 Tuberculist Genomic Region
26385 G protein-coupled receptor kinase 6 Details for - - G protein-coupled receptor kinase 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26385 Tuberculist Genomic Region	272396 threonyl-tRNA synthetase-like 2 Details for - - threonyl-tRNA synthetase-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 272396 Tuberculist Genomic Region
328580 tubulin, gamma complex associated protein 6 Details for - - tubulin, gamma complex associated protein 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 328580 Tuberculist Genomic Region	66586 cardiolipin synthase 1 Details for RP23-77H16.4 - cardiolipin synthase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66586 Tuberculist Genomic Region
66978 Luc7 homolog (S. cerevisiae)-like Details for - - Luc7 homolog (S. cerevisiae)-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66978 Tuberculist Genomic Region	67834 isocitrate dehydrogenase 3 (NAD+) alpha Details for - - isocitrate dehydrogenase 3 (NAD+) alpha GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67834 Tuberculist Genomic Region
68598 DnaJ (Hsp40) homolog, subfamily C, member 8 Details for RP23-63D8.7 - DnaJ (Hsp40) homolog, subfamily C, member 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68598 Tuberculist Genomic Region	68877 MAF1 homolog (S. cerevisiae) Details for - - MAF1 homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68877 Tuberculist Genomic Region
72103 aprataxin and PNKP like factor Details for - - aprataxin and PNKP like factor GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72103 Tuberculist Genomic Region	76568 intraflagellar transport 46 Details for - - intraflagellar transport 46 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76568 Tuberculist Genomic Region
77252 RIKEN cDNA 9430038I01 gene Details for - - RIKEN cDNA 9430038I01 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 77252 Tuberculist Genomic Region	29870 G two S phase expressed protein 1 Details for - - G two S phase expressed protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 29870 Tuberculist Genomic Region
66455 canopy 4 homolog (zebrafish) Details for - - canopy 4 homolog (zebrafish) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66455 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
Klf12_C2H2_DBD_monomeric_15_1	0.826087	0.0000193

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.053	AAMNCWAAANAW	NA	8.5	NGGGGCGGGGC	Klf4_MA0039.2, SP1_MA0079.2, SP1_MA0079.1, V$SP4_Q5_M01273, V$SP1_Q6_01_M00931, V$SP1_Q6_M00196, V$KLF7_03_M02773, V$SP1_Q4_01_M00932, V$GC_01_M00255, V$SP1_Q2_01_M00933, V$GKLF_02_M01588, V$SP1_02_M01303, V$SP4_03_M02810, V$UF1H3BETA_Q6_M01068, V$MAZR_01_M00491, V$SP1_03_M02281, V$ZFP281_01_M01597, V$SP2_01_M01783, V$E2F3_Q6_M02089, V$SP1_01_M00008, V$SMAD4_04_M02898, V$CKROX_Q2_M01175, V$ZFP281_04_M02831, V$CACD_01_M01113, V$MAZ_Q6_M00649, V$BCL6B_04_M02844, V$KROX_Q6_M00982, V$EGR1_Q6_M01873, V$EGR1_06_M02744, V$MAZ_Q6_01_M02023, V$EKLF_Q5_M01874, V$ZFP740_03_M02834, V$ZBP89_Q4_M01816, V$ZNF219_01_M01122, V$ZFP410_04_M02936, V$KLF15_Q2_M01714, V$SP1SP3_Q4_M01219, V$ETF_Q6_M00695, V$SP4_04_M02914, V$WT1_Q6_01_M02036, V$CACCCBINDINGFACTOR_Q6_M00721, V$E2F_Q2_M00803, Klf7.1, Sp4.1, Smad3.1, Zfp281.2, Egr1.1, Bcl6b.2, Zfp740.1, Zfp410.1, Sp4.2, SP4_C2H2_full_monomeric_17_1, SP1_C2H2_DBD_monomeric_11_1, KLF16_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, KLF13_C2H2_full_monomeric_18_1, SP3_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, Klf12_C2H2_DBD_monomeric_15_1, ZNF740_C2H2_full_monomeric_10_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.26	CGTCGC	NA	1.31	ATGCCGCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.62	GCTNGA	NA	NA	0.72	TGCTNSAC	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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