TargetScan_56 megaCluster: 3 Residual: 0.24 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_56	3	0.24	15	0	0.890687	0

Members

Displaying 1 - 27 of 27

15162 epithelial stromal interaction 1 (breast) Details for - - epithelial stromal interaction 1 (breast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108670 Tuberculist Genomic Region	16181 hemopoietic cell kinase Details for - - hemopoietic cell kinase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15162 Tuberculist Genomic Region
19252 interleukin 1 receptor antagonist Details for RP23-218B17.2 - interleukin 1 receptor antagonist GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16181 Tuberculist Genomic Region	20558 dual specificity phosphatase 1 Details for - - dual specificity phosphatase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19252 Tuberculist Genomic Region
209200 schlafen 4 Details for RP23-308N3.2 - schlafen 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20558 Tuberculist Genomic Region	219132 deltex 3-like (Drosophila) Details for - - deltex 3-like (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 209200 Tuberculist Genomic Region
22146 PHD finger protein 11D Details for mCG_13856 - PHD finger protein 11D GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 219132 Tuberculist Genomic Region	231655 tubulin, alpha 1C Details for - - tubulin, alpha 1C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22146 Tuberculist Genomic Region
23960 2'-5' oligoadenylate synthetase-like 1 Details for - - 2'-5' oligoadenylate synthetase-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231655 Tuberculist Genomic Region	24110 2'-5' oligoadenylate synthetase 1G Details for - - 2'-5' oligoadenylate synthetase 1G GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 23960 Tuberculist Genomic Region
243813 ubiquitin specific peptidase 18 Details for - - ubiquitin specific peptidase 18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 24110 Tuberculist Genomic Region	244183 leukocyte receptor cluster (LRC) member 9 Details for - - leukocyte receptor cluster (LRC) member 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 243813 Tuberculist Genomic Region
26433 tripartite motif-containing 30B Details for - - tripartite motif-containing 30B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 244183 Tuberculist Genomic Region	319880 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 Details for - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26433 Tuberculist Genomic Region
328830 transmembrane and coiled coil domains 3 Details for - - transmembrane and coiled coil domains 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 319880 Tuberculist Genomic Region	57444 RIKEN cDNA A530064D06 gene Details for - - RIKEN cDNA A530064D06 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 328830 Tuberculist Genomic Region
621875 interferon-stimulated protein Details for - - interferon-stimulated protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 57444 Tuberculist Genomic Region	66307 RIKEN cDNA A530040E14 gene Details for - - RIKEN cDNA A530040E14 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 621875 Tuberculist Genomic Region
667370 isochorismatase domain containing 1 Details for - - isochorismatase domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66307 Tuberculist Genomic Region	68742 RIKEN cDNA I830012O16 gene Details for - - RIKEN cDNA I830012O16 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 667370 Tuberculist Genomic Region
71898 transmembrane protein 219 Details for - - transmembrane protein 219 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68742 Tuberculist Genomic Region	80861 apolipoprotein L 9b Details for - - apolipoprotein L 9b GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71898 Tuberculist Genomic Region
80910 DEXH (Asp-Glu-X-His) box polypeptide 58 Details for RP23-390D17.5 - DEXH (Asp-Glu-X-His) box polypeptide 58 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80861 Tuberculist Genomic Region	16543 G protein-coupled receptor 84 Details for - - G protein-coupled receptor 84 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80910 Tuberculist Genomic Region
21934 MyoD family inhibitor domain containing Details for - - MyoD family inhibitor domain containing GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16543 Tuberculist Genomic Region	277203 tumor necrosis factor receptor superfamily, member 11a Details for - - tumor necrosis factor receptor superfamily, member 11a GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21934 Tuberculist Genomic Region
Details for - - transmembrane 4 L six family member 19 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 277203 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_ISGF3G_03_M02771	0.346154	0.0000000032

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.000001	AGTTTCRNTTTC	STAT1_MA0137.1, IRF1_MA0050.1, IRF2_MA0051.1, V$ISRE_01_M00258, V$ICSBP_Q6_M00699, V$ISGF3G_03_M02771, V$IRF_Q6_M00772, V$IRF2_Q6_M01882, V$IRF1_Q6_01_M01881, V$IRF_Q6_01_M00972, V$IRF7_01_M00453, V$IRF3_05_M02767, V$IRF1_01_M00062, V$IRF8_Q6_M01665, V$IRF5_03_M02769, V$IRF2_01_M00063, V$BLIMP1_Q6_M01066, V$IRF3_Q3_M01279, V$IRF4_03_M02768, V$IRF4_Q6_M01883, Isgf3g.1, Irf3.1, Irf5.2, Irf4.2, IRF7_IRF_DBD_dimeric_14_1, IRF8_IRF_full_dimeric_14_1, IRF9_IRF_full_trimeric_15_1, IRF4_IRF_full_dimeric_15_1, IRF3_IRF_full_trimeric_21_1, PRDM1_C2H2_full_monomeric-or-dimeric_15_1, IRF7_IRF_DBD_trimeric_17_1, IRF5_IRF_full_dimeric_14_1, IRF5_IRF_full_monomeric_11_1	0.00029	AAARMAAAANC	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
0.8	CGCCAA	NFIC_MA0161.1	0.85	AGCTSGAC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.56	ATGNNCGT	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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