TargetScan_7 megaCluster: 4 Residual: 0.26

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_7 4 0.26 14 0 0.841261 0

Members

Displaying 1 - 38 of 38
107513 small nucleolar RNA, C/D box 89

Details for - - small nucleolar RNA, C/D box 89

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100217461

Tuberculist Genomic Region

11773 signal sequence receptor, alpha

Details for - - signal sequence receptor, alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107513

Tuberculist Genomic Region

17395 adaptor-related protein complex 2, mu 1 subunit

Details for - - adaptor-related protein complex 2, mu 1 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11773

Tuberculist Genomic Region

18987 matrix metallopeptidase 9

Details for RP23-61O3.10-001 - matrix metallopeptidase 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17395

Tuberculist Genomic Region

20017 POU domain, class 2, transcription factor 2

Details for - - POU domain, class 2, transcription factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18987

Tuberculist Genomic Region

20725 polymerase (RNA) I polypeptide B

Details for RP24-388N11.1 - polymerase (RNA) I polypeptide B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20017

Tuberculist Genomic Region

218699 serine (or cysteine) peptidase inhibitor, clade B, member 8

Details for - - serine (or cysteine) peptidase inhibitor, clade B, member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20725

Tuberculist Genomic Region

218952 PX domain containing serine/threonine kinase

Details for - - PX domain containing serine/threonine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218699

Tuberculist Genomic Region

22224 fermitin family homolog 2 (Drosophila)

Details for RP23-359O5.1 - fermitin family homolog 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218952

Tuberculist Genomic Region

227399 ubiquitin specific peptidase 10

Details for - - ubiquitin specific peptidase 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22224

Tuberculist Genomic Region

227937 diphosphoinositol pentakisphosphate kinase 2

Details for - - diphosphoinositol pentakisphosphate kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227399

Tuberculist Genomic Region

229542 plakophilin 4

Details for RP23-311G5.1 - plakophilin 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227937

Tuberculist Genomic Region

244418 GATA zinc finger domain containing 2B

Details for - - GATA zinc finger domain containing 2B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229542

Tuberculist Genomic Region

258952 DNA segment, Chr 8, ERATO Doi 82, expressed

Details for - - DNA segment, Chr 8, ERATO Doi 82, expressed

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244418

Tuberculist Genomic Region

27275 olfactory receptor 341

Details for RP23-311F6.3 - olfactory receptor 341

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258952

Tuberculist Genomic Region

54383 nuclear fragile X mental retardation protein interacting protein 1

Details for - - nuclear fragile X mental retardation protein interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27275

Tuberculist Genomic Region

58182 polyhomeotic-like 2 (Drosophila)

Details for RP23-467J23.1 - polyhomeotic-like 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54383

Tuberculist Genomic Region

58194 serine/threonine kinase 3

Details for - - serine/threonine kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56274

Tuberculist Genomic Region

66196 prokineticin receptor 1

Details for - - prokineticin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58182

Tuberculist Genomic Region

66569 SH3-domain kinase binding protein 1

Details for RP23-39I7.6 - SH3-domain kinase binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58194

Tuberculist Genomic Region

67263 myosin XIX

Details for RP23-391K14.2 - myosin XIX

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66196

Tuberculist Genomic Region

69590 glycerophosphodiester phosphodiesterase domain containing 1

Details for RP23-352L3.1 - glycerophosphodiester phosphodiesterase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66569

Tuberculist Genomic Region

72027 zinc finger SWIM-type containing 6

Details for - - zinc finger SWIM-type containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67263

Tuberculist Genomic Region

73178 glutathione peroxidase 8 (putative)

Details for - - glutathione peroxidase 8 (putative)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69590

Tuberculist Genomic Region

74343 solute carrier family 39 (zinc transporter), member 4

Details for - - solute carrier family 39 (zinc transporter), member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72027

Tuberculist Genomic Region

74451 Wiskott-Aldrich syndrome-like (human)

Details for - - Wiskott-Aldrich syndrome-like (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73178

Tuberculist Genomic Region

78825 CREB regulated transcription coactivator 2

Details for - - CREB regulated transcription coactivator 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74343

Tuberculist Genomic Region

12051 phosphatidylglycerophosphate synthase 1

Details for RP23-268N22.7 - phosphatidylglycerophosphate synthase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74451

Tuberculist Genomic Region

14268 desumoylating isopeptidase 2

Details for - - desumoylating isopeptidase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78825

Tuberculist Genomic Region

14293 B cell leukemia/lymphoma 3

Details for - - B cell leukemia/lymphoma 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12051

Tuberculist Genomic Region

20530 fibronectin 1

Details for - - fibronectin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14268

Tuberculist Genomic Region

26900 formyl peptide receptor 1

Details for - - formyl peptide receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14293

Tuberculist Genomic Region

269799 solute carrier family 31, member 2

Details for RP23-64F17.2 - solute carrier family 31, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20530

Tuberculist Genomic Region

75089 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked

Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26900

Tuberculist Genomic Region

75345 C-type lectin domain family 4, member a1

Details for - - C-type lectin domain family 4, member a1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269799

Tuberculist Genomic Region

98366 UHRF1 (ICBP90) binding protein 1-like

Details for - - UHRF1 (ICBP90) binding protein 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75089

Tuberculist Genomic Region

Details for - - SLAM family member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75345

Tuberculist Genomic Region

Details for - - small ArfGAP 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98366

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
8.3e-21 AAWAAMAAAAAA NA 1.2 ATTCWTKTTTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.89 CGGCTG NA 1.16 CGGCCCGN NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.52 ACCGTG NA NA 0.54 ACGCNAGT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-669k 0.147059 0.0000275

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