TargetScan_74 megaCluster: 1 Residual: 0.17 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_74	1	0.17	15	0	0.943338	0

Members

Displaying 1 - 28 of 28

12977 arginase type II Details for - - arginase type II GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11847 Tuberculist Genomic Region	15277 colony stimulating factor 1 (macrophage) Details for - - colony stimulating factor 1 (macrophage) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12977 Tuberculist Genomic Region
19696 hexokinase 2 Details for - - hexokinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15277 Tuberculist Genomic Region	214150 reticuloendotheliosis oncogene Details for - - reticuloendotheliosis oncogene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19696 Tuberculist Genomic Region
230752 argonaute RISC catalytic subunit 3 Details for RP23-113P22.6 - argonaute RISC catalytic subunit 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 214150 Tuberculist Genomic Region	231207 eva-1 homolog B (C. elegans) Details for RP23-365D10.2 - eva-1 homolog B (C. elegans) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230752 Tuberculist Genomic Region
236285 cytoplasmic polyadenylation element binding protein 2 Details for - - cytoplasmic polyadenylation element binding protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231207 Tuberculist Genomic Region	240396 LanC lantibiotic synthetase component C-like 3 (bacterial) Details for RP23-423L11.1 - LanC lantibiotic synthetase component C-like 3 (bacterial) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 236285 Tuberculist Genomic Region
26397 mex3 homolog C (C. elegans) Details for - - mex3 homolog C (C. elegans) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 240396 Tuberculist Genomic Region	320790 mitogen-activated protein kinase kinase 3 Details for RP23-467E19.1 - mitogen-activated protein kinase kinase 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26397 Tuberculist Genomic Region
330096 chromodomain helicase DNA binding protein 7 Details for RP23-464N23.1 - chromodomain helicase DNA binding protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320790 Tuberculist Genomic Region	338367 shisa homolog 3 (Xenopus laevis) Details for - - shisa homolog 3 (Xenopus laevis) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 330096 Tuberculist Genomic Region
54604 myosin ID Details for - - myosin ID GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 338367 Tuberculist Genomic Region	67246 pecanex homolog (Drosophila) Details for - - pecanex homolog (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54604 Tuberculist Genomic Region
67533 RIKEN cDNA 2810474O19 gene Details for RP23-214L4.1 - RIKEN cDNA 2810474O19 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67246 Tuberculist Genomic Region	68567 PTPRF interacting protein, binding protein 1 (liprin beta 1) Details for - - PTPRF interacting protein, binding protein 1 (liprin beta 1) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67533 Tuberculist Genomic Region
71602 cell growth regulator with EF hand domain 1 Details for - - cell growth regulator with EF hand domain 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68567 Tuberculist Genomic Region	74120 myosin IE Details for - - myosin IE GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71602 Tuberculist Genomic Region
75646 zinc finger protein 263 Details for - - zinc finger protein 263 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74120 Tuberculist Genomic Region	75869 retinoic acid induced 14 Details for - - retinoic acid induced 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75646 Tuberculist Genomic Region
80859 ADP-ribosylation factor-like 5B Details for - - ADP-ribosylation factor-like 5B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75869 Tuberculist Genomic Region	99633 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80859 Tuberculist Genomic Region
217151 latrophilin 2 Details for - - latrophilin 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 99633 Tuberculist Genomic Region	56644 ADP-ribosylation factor-like 5C Details for RP23-309H19.3 - ADP-ribosylation factor-like 5C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 217151 Tuberculist Genomic Region
67338 C-type lectin domain family 7, member a Details for - - C-type lectin domain family 7, member a GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56644 Tuberculist Genomic Region	74427 ring finger and FYVE like domain containing protein Details for RP23-316C11.8 - ring finger and FYVE like domain containing protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67338 Tuberculist Genomic Region
76650 ELL associated factor 1 Details for - - ELL associated factor 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74427 Tuberculist Genomic Region	Details for - - sulfiredoxin 1 homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76650 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_RELBP52_01_M01239	0.428571	0.00000913

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.000048	CCCSGCCCCTCC	SP1_MA0079.2, V$SP1_Q6_01_M00931, V$SP1SP3_Q4_M01219, V$SP1_Q2_01_M00933, V$MAZ_Q6_01_M02023, V$GC_01_M00255, V$SP1_Q6_M00196, V$SP1_Q4_01_M00932, V$SP4_Q5_M01273, V$SP1_03_M02281, V$SP1_02_M01303, V$WT1_Q6_M01118, V$ZFP281_01_M01597, V$EGR1_Q6_M01873, V$BCL6B_04_M02844, V$UF1H3BETA_Q6_M01068, V$SP1_01_M00008, Bcl6b.2, Zfp410.1, Klf7.1, Zfp281.2, Egr1.1, Smad3.1	54000	TTCTTTNAWAAA	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.51	GACGCG	NA	1.71	GAGNGGCG	Smad3.1

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.5	TCGACA	NA	NA	0.65	AGACCATA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
mmu-miR-187	0.5	0.0000639

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-692	0.625	0.0000112

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