TargetScan_9 megaCluster: 2 Residual: 0.17

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_9 2 0.17 15 0 0.931939 0

Members

Displaying 1 - 29 of 29
100504699 RIKEN cDNA 9030425P06 gene

Details for - - RIKEN cDNA 9030425P06 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504699

Tuberculist Genomic Region

11492 a disintegrin and metallopeptidase domain 19 (meltrin beta)

Details for RP23-29H5.4 - a disintegrin and metallopeptidase domain 19 (meltrin beta)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11492

Tuberculist Genomic Region

12562 cadherin 5

Details for - - cadherin 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12562

Tuberculist Genomic Region

12769 chemokine (C-C motif) receptor 9

Details for - - chemokine (C-C motif) receptor 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12769

Tuberculist Genomic Region

13807 enolase 2, gamma neuronal

Details for - - enolase 2, gamma neuronal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13807

Tuberculist Genomic Region

14265 fragile X mental retardation syndrome 1

Details for - - fragile X mental retardation syndrome 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14265

Tuberculist Genomic Region

16145 interferon gamma induced GTPase

Details for RP24-499A8.4 - interferon gamma induced GTPase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16145

Tuberculist Genomic Region

16363 interferon regulatory factor 2

Details for - - interferon regulatory factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16363

Tuberculist Genomic Region

17119 MAX dimerization protein 1

Details for - - MAX dimerization protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17119

Tuberculist Genomic Region

17386 matrix metallopeptidase 13

Details for - - matrix metallopeptidase 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17386

Tuberculist Genomic Region

20529 solute carrier family 31, member 1

Details for RP24-145P21.1 - solute carrier family 31, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20529

Tuberculist Genomic Region

20706 serine (or cysteine) peptidase inhibitor, clade B, member 9b

Details for RP23-391I11.4 - serine (or cysteine) peptidase inhibitor, clade B, member 9b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20706

Tuberculist Genomic Region

209086 sterile alpha motif domain containing 9-like

Details for - - sterile alpha motif domain containing 9-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209086

Tuberculist Genomic Region

20969 syndecan 1

Details for - - syndecan 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20969

Tuberculist Genomic Region

217344 rhomboid 5 homolog 2 (Drosophila)

Details for RP23-313J14.3 - rhomboid 5 homolog 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217344

Tuberculist Genomic Region

22029 TNF receptor-associated factor 1

Details for RP23-9N11.6 - TNF receptor-associated factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22029

Tuberculist Genomic Region

24127 5'-3' exoribonuclease 1

Details for - - 5'-3' exoribonuclease 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24127

Tuberculist Genomic Region

433470 expressed sequence AA467197

Details for RP23-101F14.3 - expressed sequence AA467197

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 433470

Tuberculist Genomic Region

652925 transmembrane protein 243, mitochondrial

Details for - - transmembrane protein 243, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 652925

Tuberculist Genomic Region

667034 purine-nucleoside phosphorylase 2

Details for - - purine-nucleoside phosphorylase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 667034

Tuberculist Genomic Region

71704 Rho guanine nucleotide exchange factor (GEF) 3

Details for - - Rho guanine nucleotide exchange factor (GEF) 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71704

Tuberculist Genomic Region

74243 SLX4 interacting protein

Details for RP23-173O12.2 - SLX4 interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74243

Tuberculist Genomic Region

17295 met proto-oncogene

Details for - - met proto-oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17295

Tuberculist Genomic Region

620078 RIKEN cDNA C130026I21 gene

Details for - - RIKEN cDNA C130026I21 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 620078

Tuberculist Genomic Region

22035 tumor necrosis factor (ligand) superfamily, member 10

Details for - - tumor necrosis factor (ligand) superfamily, member 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22035

Tuberculist Genomic Region

240665 cyclin J

Details for - - cyclin J

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240665

Tuberculist Genomic Region

55932 guanylate binding protein 3

Details for - - guanylate binding protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 55932

Tuberculist Genomic Region

628705 PHD finger protein 11C

Details for mCG_1037415 - PHD finger protein 11C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 628705

Tuberculist Genomic Region

67245 pellino 1

Details for RP23-93O11.1 - pellino 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67245

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ISGF3G_03_M02771 0.285714 0.000000123

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000000057 ARNAAAAAAAAA FOXC1_forkhead_DBD_dimeric_13_1 7.1 AAAGGNAAACAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.8 GCGACG NA 0.98 CGTATCGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.63 GTAATGCA NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-465a-5p, mmu-miR-465b-5p, mmu-miR-465c-5p 0.833333 0.0000106

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-212-5p 0.5 0.00000868

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