TargetScan_92 megaCluster: 11 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_92 11 0.21 11 0 0.844141 0.001

Members

Displaying 1 - 21 of 21
17215 minichromosome maintenance deficient 3 (S. cerevisiae)

Details for - - minichromosome maintenance deficient 3 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17215

Tuberculist Genomic Region

18005 NIMA (never in mitosis gene a)-related expressed kinase 2

Details for - - NIMA (never in mitosis gene a)-related expressed kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18005

Tuberculist Genomic Region

20409 osteoclast stimulating factor 1

Details for - - osteoclast stimulating factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20409

Tuberculist Genomic Region

215243 TRAF3 interacting protein 3

Details for RP23-282D4.1 - TRAF3 interacting protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215243

Tuberculist Genomic Region

216443 methionine-tRNA synthetase

Details for - - methionine-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216443

Tuberculist Genomic Region

21824 thrombomodulin

Details for RP23-70N3.2 - thrombomodulin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21824

Tuberculist Genomic Region

235559 topoisomerase (DNA) II binding protein 1

Details for - - topoisomerase (DNA) II binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235559

Tuberculist Genomic Region

26886 centromere protein H

Details for - - centromere protein H

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26886

Tuberculist Genomic Region

26951 zw10 kinetochore protein

Details for - - zw10 kinetochore protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26951

Tuberculist Genomic Region

381318 NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)

Details for - - NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381318

Tuberculist Genomic Region

69305 decapping enzyme, scavenger

Details for - - decapping enzyme, scavenger

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69305

Tuberculist Genomic Region

70218 kinesin family member 18B

Details for RP23-463E7.6 - kinesin family member 18B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70218

Tuberculist Genomic Region

75597 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75597

Tuberculist Genomic Region

12566 cyclin-dependent kinase 2

Details for - - cyclin-dependent kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12566

Tuberculist Genomic Region

17992 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17992

Tuberculist Genomic Region

213742 inactive X specific transcripts

Details for - - inactive X specific transcripts

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213742

Tuberculist Genomic Region

317717 SEC22 vesicle trafficking protein homolog A (S. cerevisiae)

Details for - - SEC22 vesicle trafficking protein homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 317717

Tuberculist Genomic Region

53381 peroxiredoxin 4

Details for RP23-395K13.3 - peroxiredoxin 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53381

Tuberculist Genomic Region

66609 crystallin, zeta (quinone reductase)-like 1

Details for - - crystallin, zeta (quinone reductase)-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66609

Tuberculist Genomic Region

68394 coiled-coil domain containing 163

Details for RP23-109A3.1 - coiled-coil domain containing 163

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68394

Tuberculist Genomic Region

70536 glutaminyl-peptide cyclotransferase (glutaminyl cyclase)

Details for - - glutaminyl-peptide cyclotransferase (glutaminyl cyclase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70536

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
POU3F3_POU_DBD_dimeric_12_1 0.2 0.00000548

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.52 AAGAANAAAAA NA 1500000 AGCCAATCAGA NFYA_MA0060.1, V$NFY_C_M00209, V$NFYA_Q5_M02106, V$NFYC_Q5_M02107, V$NFY_01_M00287, V$ALPHACP1_01_M00687, V$NFY_Q6_M00185, V$NFY_Q6_01_M00775, V$CAAT_01_M00254, V$HOXA7_01_M01108

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.26 CGGACG MIZF_MA0131.1, V$MIZF_01_M01182 1.78 CGTCCGAT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
1 GCATTYNC NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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