PITA_105 megaCluster: 11 Residual: 0.13

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_105 11 0.13 15 0 0.970267 0

Members

Displaying 1 - 30 of 30
107272 phosphoserine aminotransferase 1

Details for - - phosphoserine aminotransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107272

Tuberculist Genomic Region

108000 centromere protein F

Details for - - centromere protein F

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108000

Tuberculist Genomic Region

11689 arachidonate 5-lipoxygenase

Details for - - arachidonate 5-lipoxygenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11689

Tuberculist Genomic Region

11799 baculoviral IAP repeat-containing 5

Details for RP23-268N22.2 - baculoviral IAP repeat-containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11799

Tuberculist Genomic Region

12532 cell division cycle 25C

Details for - - cell division cycle 25C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12532

Tuberculist Genomic Region

16906 lamin B1

Details for - - lamin B1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16906

Tuberculist Genomic Region

18005 NIMA (never in mitosis gene a)-related expressed kinase 2

Details for - - NIMA (never in mitosis gene a)-related expressed kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18005

Tuberculist Genomic Region

19357 RAD21 homolog (S. pombe)

Details for - - RAD21 homolog (S. pombe)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19357

Tuberculist Genomic Region

20249 stearoyl-Coenzyme A desaturase 1

Details for - - stearoyl-Coenzyme A desaturase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20249

Tuberculist Genomic Region

20322 sorbitol dehydrogenase

Details for RP23-173H17.1 - sorbitol dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20322

Tuberculist Genomic Region

21335 transforming, acidic coiled-coil containing protein 3

Details for - - transforming, acidic coiled-coil containing protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21335

Tuberculist Genomic Region

218581 DEP domain containing 1B

Details for - - DEP domain containing 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218581

Tuberculist Genomic Region

218977 discs, large (Drosophila) homolog-associated protein 5

Details for - - discs, large (Drosophila) homolog-associated protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218977

Tuberculist Genomic Region

230098 Rho guanine nucleotide exchange factor (GEF) 39

Details for RP23-195K8.7 - Rho guanine nucleotide exchange factor (GEF) 39

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230098

Tuberculist Genomic Region

230316 multiple EGF-like-domains 9

Details for - - multiple EGF-like-domains 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230316

Tuberculist Genomic Region

240055 neuralized homolog 1b (Drosophila)

Details for - - neuralized homolog 1b (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240055

Tuberculist Genomic Region

381293 kinesin family member 14

Details for - - kinesin family member 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381293

Tuberculist Genomic Region

494448 chromobox 6

Details for - - chromobox 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 494448

Tuberculist Genomic Region

52033 PDZ binding kinase

Details for - - PDZ binding kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52033

Tuberculist Genomic Region

68585 reticulon 4

Details for RP23-176O5.4 - reticulon 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68585

Tuberculist Genomic Region

68971 TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)

Details for - - TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68971

Tuberculist Genomic Region

73254 coiled-coil domain containing 18

Details for - - coiled-coil domain containing 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73254

Tuberculist Genomic Region

78767 EF-hand calcium binding domain 11

Details for - - EF-hand calcium binding domain 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78767

Tuberculist Genomic Region

107995 cell division cycle 20

Details for RP23-145E1.5 - cell division cycle 20

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107995

Tuberculist Genomic Region

26901 differentially expressed in B16F10 1

Details for - - differentially expressed in B16F10 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26901

Tuberculist Genomic Region

75939 RIKEN cDNA 4930579G24 gene

Details for - - RIKEN cDNA 4930579G24 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75939

Tuberculist Genomic Region

73804 kinesin family member 2C

Details for RP23-59L24.10-001 - kinesin family member 2C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73804

Tuberculist Genomic Region

109212 family with sequence similarity 64, member A

Details for RP23-207N15.1 - family with sequence similarity 64, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109212

Tuberculist Genomic Region

12316 asp (abnormal spindle)-like, microcephaly associated (Drosophila)

Details for AC158946.1 - asp (abnormal spindle)-like, microcephaly associated (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12316

Tuberculist Genomic Region

75317 PARP1 binding protein

Details for - - PARP1 binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75317

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_NFYA_Q5_M02106 0.566667 0.00000112

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000082 KTTTTGTTTTY Foxj1.1, Foxj3.2, Foxl1.2, Foxk1.1, Foxl1.1 0.7 ANNWTTCAAAW NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.33 CGTTCG NA 1.47 CTTCGCGG

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.59 GTGNGT NA NA 0.87 CNGTGAGT NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-142-5p 0.833333 0.0000181

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-1192 0.56 0.0000413

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