PITA_107 megaCluster: 11 Residual: 0.16

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_107 11 0.16 15 0 0.956356 0

Members

Displaying 1 - 29 of 29
105446 guanosine monophosphate reductase 2

Details for - - guanosine monophosphate reductase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105446

Tuberculist Genomic Region

110446 acetyl-Coenzyme A acetyltransferase 1

Details for - - acetyl-Coenzyme A acetyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110446

Tuberculist Genomic Region

11792 apurinic/apyrimidinic endonuclease 1

Details for - - apurinic/apyrimidinic endonuclease 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11792

Tuberculist Genomic Region

15199 heme binding protein 1

Details for - - heme binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15199

Tuberculist Genomic Region

18597 pyruvate dehydrogenase E1 alpha 1

Details for RP23-36P16.4 - pyruvate dehydrogenase E1 alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18597

Tuberculist Genomic Region

18634 peroxisomal biogenesis factor 7

Details for - - peroxisomal biogenesis factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18634

Tuberculist Genomic Region

20280 sterol carrier protein 2, liver

Details for RP23-84A23.1 - sterol carrier protein 2, liver

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20280

Tuberculist Genomic Region

28040 DNA segment, Chr 6, Wayne State University 163, expressed

Details for - - DNA segment, Chr 6, Wayne State University 163, expressed

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 28040

Tuberculist Genomic Region

56046 ubiquinol-cytochrome c reductase complex assembly factor 1

Details for RP23-380B10.2 - ubiquinol-cytochrome c reductase complex assembly factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56046

Tuberculist Genomic Region

56372 RIKEN cDNA 1110004F10 gene

Details for - - RIKEN cDNA 1110004F10 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56372

Tuberculist Genomic Region

66799 ubiquitin-conjugating enzyme E2W (putative)

Details for - - ubiquitin-conjugating enzyme E2W (putative)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66799

Tuberculist Genomic Region

66975 trafficking protein particle complex 13

Details for - - trafficking protein particle complex 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66975

Tuberculist Genomic Region

67201 glyoxalase domain containing 4

Details for RP23-147P4.6 - glyoxalase domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67201

Tuberculist Genomic Region

68021 biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)

Details for - - biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68021

Tuberculist Genomic Region

68153 general transcription factor II E, polypeptide 2 (beta subunit)

Details for - - general transcription factor II E, polypeptide 2 (beta subunit)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68153

Tuberculist Genomic Region

71340 RIO kinase 1 (yeast)

Details for - - RIO kinase 1 (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71340

Tuberculist Genomic Region

101513 MOB kinase activator 2

Details for - - MOB kinase activator 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101513

Tuberculist Genomic Region

11757 peroxiredoxin 3

Details for - - peroxiredoxin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11757

Tuberculist Genomic Region

15388 heterogeneous nuclear ribonucleoprotein L

Details for - - heterogeneous nuclear ribonucleoprotein L

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15388

Tuberculist Genomic Region

26371 cytosolic iron-sulfur protein assembly 1

Details for RP23-206D14.3 - cytosolic iron-sulfur protein assembly 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26371

Tuberculist Genomic Region

27061 B cell receptor associated protein 31

Details for RP23-329M9.5 - B cell receptor associated protein 31

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27061

Tuberculist Genomic Region

57423 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2

Details for - - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57423

Tuberculist Genomic Region

66046 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5

Details for - - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66046

Tuberculist Genomic Region

66258 mitochondrial ribosomal protein S17

Details for - - mitochondrial ribosomal protein S17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66258

Tuberculist Genomic Region

66925 succinate dehydrogenase complex, subunit D, integral membrane protein

Details for UNQ5809 - succinate dehydrogenase complex, subunit D, integral membrane protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66925

Tuberculist Genomic Region

68347 RIKEN cDNA 0610011F06 gene

Details for - - RIKEN cDNA 0610011F06 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68347

Tuberculist Genomic Region

69151 leucine zipper and CTNNBIP1 domain containing

Details for RP23-153G17.1 - leucine zipper and CTNNBIP1 domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69151

Tuberculist Genomic Region

73694 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73694

Tuberculist Genomic Region

11532 alcohol dehydrogenase 5 (class III), chi polypeptide

Details for - - alcohol dehydrogenase 5 (class III), chi polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11532

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000015 ARAAAARMAA NA 1300 TTAAAAACAWA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.51 CGGCGT NA 1.68 CGCGTCAC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.5 ACNTCSTA NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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