PITA_108 megaCluster: 1 Residual: 0.23

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_108 1 0.23 13 0 0.819861 0

Members

Displaying 1 - 41 of 41
13822 activating transcription factor 3

Details for - - activating transcription factor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11910

Tuberculist Genomic Region

14701 arginine vasopressin

Details for RP23-100C5.5 - arginine vasopressin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11998

Tuberculist Genomic Region

18227 erythrocyte protein band 4.1-like 2

Details for - - erythrocyte protein band 4.1-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13822

Tuberculist Genomic Region

19201 guanine nucleotide binding protein (G protein), gamma 12

Details for - - guanine nucleotide binding protein (G protein), gamma 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14701

Tuberculist Genomic Region

259122 nuclear receptor subfamily 4, group A, member 2

Details for RP23-271B15.1 - nuclear receptor subfamily 4, group A, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18227

Tuberculist Genomic Region

26397 proline-serine-threonine phosphatase-interacting protein 2

Details for - - proline-serine-threonine phosphatase-interacting protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19201

Tuberculist Genomic Region

51902 olfactory receptor 635

Details for - - olfactory receptor 635

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 259122

Tuberculist Genomic Region

54396 mitogen-activated protein kinase kinase 3

Details for RP23-467E19.1 - mitogen-activated protein kinase kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26397

Tuberculist Genomic Region

55935 ring finger protein 24

Details for RP23-387C21.6 - ring finger protein 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 51902

Tuberculist Genomic Region

71602 immunity-related GTPase family M member 2

Details for RP24-499A8.1 - immunity-related GTPase family M member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54396

Tuberculist Genomic Region

72054 formin binding protein 4

Details for RP23-322I11.2 - formin binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 55935

Tuberculist Genomic Region

74427 myosin IE

Details for - - myosin IE

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71602

Tuberculist Genomic Region

100503370 cytochrome P450, family 4, subfamily f, polypeptide 18

Details for - - cytochrome P450, family 4, subfamily f, polypeptide 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72054

Tuberculist Genomic Region

102657 ELL associated factor 1

Details for - - ELL associated factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74427

Tuberculist Genomic Region

104099 predicted gene, 19660

Details for - - predicted gene, 19660

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503370

Tuberculist Genomic Region

12046 CD276 antigen

Details for - - CD276 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102657

Tuberculist Genomic Region

12983 integrin alpha 9

Details for - - integrin alpha 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104099

Tuberculist Genomic Region

13025 B cell leukemia/lymphoma 2 related protein A1c

Details for - - B cell leukemia/lymphoma 2 related protein A1c

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12046

Tuberculist Genomic Region

15258 colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)

Details for - - colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12983

Tuberculist Genomic Region

18081 cytotoxic T lymphocyte-associated protein 2 beta

Details for - - cytotoxic T lymphocyte-associated protein 2 beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13025

Tuberculist Genomic Region

217151 homeodomain interacting protein kinase 2

Details for - - homeodomain interacting protein kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15258

Tuberculist Genomic Region

21938 ninjurin 1

Details for - - ninjurin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18081

Tuberculist Genomic Region

338523 ADP-ribosylation factor-like 5C

Details for RP23-309H19.3 - ADP-ribosylation factor-like 5C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217151

Tuberculist Genomic Region

546325 tumor necrosis factor receptor superfamily, member 1b

Details for RP23-157J11.1 - tumor necrosis factor receptor superfamily, member 1b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21938

Tuberculist Genomic Region

621976 lysine (K)-specific demethylase 7A

Details for - - lysine (K)-specific demethylase 7A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 338523

Tuberculist Genomic Region

67246 predicted gene 5936

Details for RP23-459K15.9 - predicted gene 5936

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 546325

Tuberculist Genomic Region

71795 transmembrane protein 170B

Details for - - transmembrane protein 170B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 621976

Tuberculist Genomic Region

77036 RIKEN cDNA 2810474O19 gene

Details for RP23-214L4.1 - RIKEN cDNA 2810474O19 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67246

Tuberculist Genomic Region

16491 phosphatidylinositol transfer protein, cytoplasmic 1

Details for RP23-317F9.8 - phosphatidylinositol transfer protein, cytoplasmic 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71795

Tuberculist Genomic Region

19663 RIKEN cDNA 1700109H08 gene

Details for - - RIKEN cDNA 1700109H08 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77036

Tuberculist Genomic Region

214133 potassium voltage-gated channel, shaker-related subfamily, member 3

Details for - - potassium voltage-gated channel, shaker-related subfamily, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16491

Tuberculist Genomic Region

68732 RNA binding protein gene with multiple splicing

Details for - - RNA binding protein gene with multiple splicing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19663

Tuberculist Genomic Region

21817 tet methylcytosine dioxygenase 2

Details for - - tet methylcytosine dioxygenase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214133

Tuberculist Genomic Region

219140 leucine rich repeat containing 16A

Details for RP23-462P2.7 - leucine rich repeat containing 16A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68732

Tuberculist Genomic Region

21929 transglutaminase 2, C polypeptide

Details for RP23-396G1.2 - transglutaminase 2, C polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21817

Tuberculist Genomic Region

22695 spermatogenesis associated 13

Details for - - spermatogenesis associated 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 219140

Tuberculist Genomic Region

320790 tumor necrosis factor, alpha-induced protein 3

Details for - - tumor necrosis factor, alpha-induced protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21929

Tuberculist Genomic Region

230738 zinc finger protein 36

Details for - - zinc finger protein 36

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22695

Tuberculist Genomic Region

23921 chromodomain helicase DNA binding protein 7

Details for RP23-464N23.1 - chromodomain helicase DNA binding protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320790

Tuberculist Genomic Region

Details for RP23-325M14.9 - zinc finger CCCH type containing 12A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230738

Tuberculist Genomic Region

Details for - - SH2B adaptor protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23921

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_AP1_Q4_M00188 0.410256 0.000000741

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
150 ATWTGTTTAAAA NA 630000 ATAATTACAGAA Prrx2_MA0075.1, V$ZNF333_01_M01230, Dlx3.1, Dlx4.1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.1 ACCGCG NA 1.25 CGNGCCCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.52 AANGCC NA NA 0.54 GTGGTNGA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-337-3p 0.92 0.00000000507

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-5125 0.678571 0.000000101

Add comment

Log in or register to post comments