PITA_110 megaCluster: 6 Residual: 0.17 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_110	6	0.17	15	0	0.948721	0

Members

Displaying 1 - 37 of 37

17001 leukotriene C4 synthase Details for RP23-319B15.7 - leukotriene C4 synthase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17001 Tuberculist Genomic Region	53945 solute carrier family 40 (iron-regulated transporter), member 1 Details for - - solute carrier family 40 (iron-regulated transporter), member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 53945 Tuberculist Genomic Region
59013 heterogeneous nuclear ribonucleoprotein H1 Details for RP23-121P11.1 - heterogeneous nuclear ribonucleoprotein H1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 59013 Tuberculist Genomic Region	59052 methyltransferase like 9 Details for MNCb-5680 - methyltransferase like 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 59052 Tuberculist Genomic Region
66694 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 Details for - - ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66694 Tuberculist Genomic Region	67075 magnesium transporter 1 Details for RP23-186F4.1 - magnesium transporter 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67075 Tuberculist Genomic Region
101488 solute carrier organic anion transporter family, member 2b1 Details for - - solute carrier organic anion transporter family, member 2b1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 101488 Tuberculist Genomic Region	107652 UDP-N-acetylglucosamine pyrophosphorylase 1 Details for - - UDP-N-acetylglucosamine pyrophosphorylase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107652 Tuberculist Genomic Region
114641 ribosomal protein L31 Details for - - ribosomal protein L31 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 114641 Tuberculist Genomic Region	12469 chaperonin containing Tcp1, subunit 8 (theta) Details for - - chaperonin containing Tcp1, subunit 8 (theta) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12469 Tuberculist Genomic Region
14423 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 Details for - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14423 Tuberculist Genomic Region	14635 galactokinase 1 Details for RP23-42F6.2 - galactokinase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14635 Tuberculist Genomic Region
17181 matrilin 2 Details for - - matrilin 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17181 Tuberculist Genomic Region	18453 prolyl 4-hydroxylase, beta polypeptide Details for RP23-84C12.2 - prolyl 4-hydroxylase, beta polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18453 Tuberculist Genomic Region
20422 split hand/foot malformation (ectrodactyly) type 1 Details for - - split hand/foot malformation (ectrodactyly) type 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20422 Tuberculist Genomic Region	20916 succinate-Coenzyme A ligase, ADP-forming, beta subunit Details for - - succinate-Coenzyme A ligase, ADP-forming, beta subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20916 Tuberculist Genomic Region
227929 cytohesin 1 interacting protein Details for RP23-255J22.4 - cytohesin 1 interacting protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227929 Tuberculist Genomic Region	232679 zinc finger, C3HC type 1 Details for - - zinc finger, C3HC type 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 232679 Tuberculist Genomic Region
380629 headcase homolog (Drosophila) Details for - - headcase homolog (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 380629 Tuberculist Genomic Region	56358 coatomer protein complex, subunit zeta 2 Details for RP23-353J21.4 - coatomer protein complex, subunit zeta 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56358 Tuberculist Genomic Region
63959 solute carrier family 29 (nucleoside transporters), member 1 Details for - - solute carrier family 29 (nucleoside transporters), member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 63959 Tuberculist Genomic Region	64209 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 Details for - - homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 64209 Tuberculist Genomic Region
66413 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 Details for - - proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66413 Tuberculist Genomic Region	66469 family with sequence similarity 213, member B Details for RP23-15L19.6 - family with sequence similarity 213, member B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66469 Tuberculist Genomic Region
68263 pyruvate dehydrogenase (lipoamide) beta Details for - - pyruvate dehydrogenase (lipoamide) beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68263 Tuberculist Genomic Region	72391 cyclin-dependent kinase inhibitor 3 Details for - - cyclin-dependent kinase inhibitor 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72391 Tuberculist Genomic Region
74197 general transcription factor II E, polypeptide 1 (alpha subunit) Details for - - general transcription factor II E, polypeptide 1 (alpha subunit) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74197 Tuberculist Genomic Region	76915 meiotic nuclear divisions 1 homolog (S. cerevisiae) Details for - - meiotic nuclear divisions 1 homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76915 Tuberculist Genomic Region
76936 heterogeneous nuclear ribonucleoprotein M Details for RP24-225N8.1 - heterogeneous nuclear ribonucleoprotein M GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76936 Tuberculist Genomic Region	80286 tumor suppressor candidate 3 Details for - - tumor suppressor candidate 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80286 Tuberculist Genomic Region
230908 TAR DNA binding protein Details for RP23-331P21.5 - TAR DNA binding protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230908 Tuberculist Genomic Region	108000 centromere protein F Details for - - centromere protein F GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108000 Tuberculist Genomic Region
17992 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17992 Tuberculist Genomic Region	66231 THO complex 7 homolog (Drosophila) Details for - - THO complex 7 homolog (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66231 Tuberculist Genomic Region
66861 DnaJ (Hsp40) homolog, subfamily C, member 10 Details for RP23-282M14.2 - DnaJ (Hsp40) homolog, subfamily C, member 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66861 Tuberculist Genomic Region	213742 inactive X specific transcripts Details for - - inactive X specific transcripts GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 213742 Tuberculist Genomic Region
70536 glutaminyl-peptide cyclotransferase (glutaminyl cyclase) Details for - - glutaminyl-peptide cyclotransferase (glutaminyl cyclase) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70536 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_MSX1_01_M00394	0.111111	0.00000384

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.000000000000066	NAAAAAARAAAA	NA	0.000015	GCYCCGCCCCC	SP1_MA0079.2, Klf4_MA0039.2, V$SP1_Q6_M00196, V$GC_01_M00255, V$SP1_Q6_01_M00931, V$SP4_Q5_M01273, V$SP1_Q4_01_M00932, V$SP1_Q2_01_M00933, V$SP4_03_M02810, V$SP1_03_M02281, V$UF1H3BETA_Q6_M01068, V$EGR1_Q6_M01873, V$SP1_02_M01303, V$ZFP281_01_M01597, V$KLF7_03_M02773, V$SP2_01_M01783, V$ZBP89_Q4_M01816, V$EGR1_06_M02744, V$GKLF_02_M01588, V$KROX_Q6_M00982, V$MAZR_01_M00491, V$SP1_01_M00008, V$E2F3_Q6_M02089, V$MAZ_Q6_01_M02023, V$WT1_Q6_01_M02036, V$BCL6B_04_M02844, V$SMAD4_04_M02898, V$ZFP740_03_M02834, V$ZFP410_04_M02936, V$FPM315_01_M01587, V$ZNF219_01_M01122, V$ZFP281_04_M02831, V$KLF15_Q2_M01714, Sp4.1, Klf7.1, Egr1.1, Bcl6b.2, Smad3.1, Zfp410.1, Zfp740.1, Zfp281.2, Zif268.1, Sp4.2, SP4_C2H2_full_monomeric_17_1, SP1_C2H2_DBD_monomeric_11_1, KLF16_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, SP3_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, KLF13_C2H2_full_monomeric_18_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.24	TCGGCG	NA	1.34	CGCGNAGG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.51	AGTCGT	NA	NA	0.58	GTCNTTGA	mmu-mir-196a-1-3p	7mer_m8

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

Add comment

Log in or register to post comments