PITA_131 megaCluster: 3 Residual: 0.19

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_131 3 0.19 15 0 0.933731 0

Members

Displaying 1 - 34 of 34
108116 solute carrier organic anion transporter family, member 3a1

Details for - - solute carrier organic anion transporter family, member 3a1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108116

Tuberculist Genomic Region

142688 ankyrin repeat and SOCS box-containing 13

Details for - - ankyrin repeat and SOCS box-containing 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 142688

Tuberculist Genomic Region

18032 nuclear factor I/X

Details for - - nuclear factor I/X

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18032

Tuberculist Genomic Region

18126 nitric oxide synthase 2, inducible

Details for RP23-341J22.2 - nitric oxide synthase 2, inducible

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18126

Tuberculist Genomic Region

231002 pleckstrin homology domain containing, family N member 1

Details for - - pleckstrin homology domain containing, family N member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231002

Tuberculist Genomic Region

100124687 T cell receptor beta variable 22

Details for - - T cell receptor beta variable 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100124687

Tuberculist Genomic Region

100502793 predicted gene, 19375

Details for - - predicted gene, 19375

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100502793

Tuberculist Genomic Region

101023 zinc finger protein 513

Details for - - zinc finger protein 513

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101023

Tuberculist Genomic Region

11603 agrin

Details for RP23-139J18.2 - agrin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11603

Tuberculist Genomic Region

14118 fibrillin 1

Details for RP23-368I1.1 - fibrillin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14118

Tuberculist Genomic Region

14289 formyl peptide receptor 2

Details for - - formyl peptide receptor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14289

Tuberculist Genomic Region

14859 glutathione S-transferase, alpha 3

Details for - - glutathione S-transferase, alpha 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14859

Tuberculist Genomic Region

17281 FYVE and coiled-coil domain containing 1

Details for - - FYVE and coiled-coil domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17281

Tuberculist Genomic Region

18991 POU domain, class 3, transcription factor 1

Details for RP23-230F2.2 - POU domain, class 3, transcription factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18991

Tuberculist Genomic Region

19275 protein tyrosine phosphatase, receptor type, N

Details for - - protein tyrosine phosphatase, receptor type, N

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19275

Tuberculist Genomic Region

216874 calmodulin binding transcription activator 2

Details for DN-183N8.19-006 - calmodulin binding transcription activator 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216874

Tuberculist Genomic Region

218820 zinc finger protein 503

Details for - - zinc finger protein 503

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218820

Tuberculist Genomic Region

223672 apolipoprotein L 9a

Details for - - apolipoprotein L 9a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223672

Tuberculist Genomic Region

223693 transmembrane protein 184b

Details for - - transmembrane protein 184b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223693

Tuberculist Genomic Region

224794 ectonucleotide pyrophosphatase/phosphodiesterase 4

Details for - - ectonucleotide pyrophosphatase/phosphodiesterase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224794

Tuberculist Genomic Region

268749 ring finger protein 31

Details for - - ring finger protein 31

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 268749

Tuberculist Genomic Region

326623 tumor necrosis factor (ligand) superfamily, member 15

Details for - - tumor necrosis factor (ligand) superfamily, member 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 326623

Tuberculist Genomic Region

327957 SLP adaptor and CSK interacting membrane protein

Details for RP23-326P7.14-001 - SLP adaptor and CSK interacting membrane protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327957

Tuberculist Genomic Region

329260 DENN/MADD domain containing 1B

Details for - - DENN/MADD domain containing 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329260

Tuberculist Genomic Region

56738 molybdenum cofactor synthesis 1

Details for - - molybdenum cofactor synthesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56738

Tuberculist Genomic Region

619308 RIKEN cDNA F830208F22 gene

Details for - - RIKEN cDNA F830208F22 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 619308

Tuberculist Genomic Region

65107 low-density lipoprotein receptor-related protein 10

Details for - - low-density lipoprotein receptor-related protein 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65107

Tuberculist Genomic Region

66168 glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)

Details for - - glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66168

Tuberculist Genomic Region

68027 transmembrane protein 178

Details for - - transmembrane protein 178

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68027

Tuberculist Genomic Region

69538 anthrax toxin receptor 1

Details for - - anthrax toxin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69538

Tuberculist Genomic Region

71254 nuclear apoptosis inducing factor 1

Details for RP23-255P20.2 - nuclear apoptosis inducing factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71254

Tuberculist Genomic Region

75560 E1A binding protein p400

Details for - - E1A binding protein p400

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75560

Tuberculist Genomic Region

76551 coiled-coil domain containing 6

Details for - - coiled-coil domain containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76551

Tuberculist Genomic Region

20847 signal transducer and activator of transcription 2

Details for - - signal transducer and activator of transcription 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20847

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRF1_MA0050.1 0.516129 0.0000000000535

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.02 CGAGCG NA 1.2 CGGGNACG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.77 AACGCG NA NA 1 GGAACGCG NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-18a, mmu-miR-18b 0.76 0.0000252

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-326 0.423077 0.0000652

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