PITA_147 megaCluster: 3 Residual: 0.25

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_147 3 0.25 15 0 0.879514 0

Members

Displaying 1 - 30 of 30
105559 muscleblind-like 2

Details for - - muscleblind-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105559

Tuberculist Genomic Region

16449 jagged 1

Details for RP23-173O12.3 - jagged 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16449

Tuberculist Genomic Region

16543 MyoD family inhibitor domain containing

Details for - - MyoD family inhibitor domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16543

Tuberculist Genomic Region

21934 tumor necrosis factor receptor superfamily, member 11a

Details for - - tumor necrosis factor receptor superfamily, member 11a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21934

Tuberculist Genomic Region

22234 UDP-glucose ceramide glucosyltransferase

Details for RP23-57N22.4 - UDP-glucose ceramide glucosyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22234

Tuberculist Genomic Region

22436 xanthine dehydrogenase

Details for - - xanthine dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22436

Tuberculist Genomic Region

231655 2'-5' oligoadenylate synthetase-like 1

Details for - - 2'-5' oligoadenylate synthetase-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231655

Tuberculist Genomic Region

234839 piezo-type mechanosensitive ion channel component 1

Details for - - piezo-type mechanosensitive ion channel component 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234839

Tuberculist Genomic Region

26433 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3

Details for - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26433

Tuberculist Genomic Region

328830 RIKEN cDNA A530064D06 gene

Details for - - RIKEN cDNA A530064D06 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 328830

Tuberculist Genomic Region

432486 N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits

Details for - - N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 432486

Tuberculist Genomic Region

574428 zinc finger, MYND-type containing 15

Details for DN-491F10.7 - zinc finger, MYND-type containing 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 574428

Tuberculist Genomic Region

71279 solute carrier family 29 (nucleoside transporters), member 3

Details for - - solute carrier family 29 (nucleoside transporters), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71279

Tuberculist Genomic Region

74645 family with sequence similarity 46, member C

Details for DN-384L23.3 - family with sequence similarity 46, member C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74645

Tuberculist Genomic Region

80861 DEXH (Asp-Glu-X-His) box polypeptide 58

Details for RP23-390D17.5 - DEXH (Asp-Glu-X-His) box polypeptide 58

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80861

Tuberculist Genomic Region

108670 mitochondrial tumor suppressor 1

Details for - - mitochondrial tumor suppressor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102103

Tuberculist Genomic Region

109934 epithelial stromal interaction 1 (breast)

Details for - - epithelial stromal interaction 1 (breast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108670

Tuberculist Genomic Region

12289 active BCR-related gene

Details for RP23-48B14.2 - active BCR-related gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109934

Tuberculist Genomic Region

21871 calcium channel, voltage-dependent, L type, alpha 1D subunit

Details for - - calcium channel, voltage-dependent, L type, alpha 1D subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12289

Tuberculist Genomic Region

219132 ATPase, H+ transporting, lysosomal V0 subunit A2

Details for - - ATPase, H+ transporting, lysosomal V0 subunit A2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21871

Tuberculist Genomic Region

233977 PHD finger protein 11D

Details for mCG_13856 - PHD finger protein 11D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 219132

Tuberculist Genomic Region

243813 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1

Details for - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233977

Tuberculist Genomic Region

277203 leukocyte receptor cluster (LRC) member 9

Details for - - leukocyte receptor cluster (LRC) member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243813

Tuberculist Genomic Region

319880 transmembrane 4 L six family member 19

Details for - - transmembrane 4 L six family member 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 277203

Tuberculist Genomic Region

667597 transmembrane and coiled coil domains 3

Details for - - transmembrane and coiled coil domains 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 319880

Tuberculist Genomic Region

71898 cDNA sequence BC023105

Details for - - cDNA sequence BC023105

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 667597

Tuberculist Genomic Region

80752 apolipoprotein L 9b

Details for - - apolipoprotein L 9b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71898

Tuberculist Genomic Region

16402 family with sequence similarity 20, member C

Details for - - family with sequence similarity 20, member C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80752

Tuberculist Genomic Region

60533 integrin alpha 5 (fibronectin receptor alpha)

Details for - - integrin alpha 5 (fibronectin receptor alpha)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16402

Tuberculist Genomic Region

Details for - - CD274 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60533

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_P50P50_Q3_M01223 0.482759 0.0000177

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.01 TCCGGC NA 1.19 CCGACCGT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.59 CGGACG NA NA 0.82 NGACTCAG mmu-mir-1199-5p 7mer_a1

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-433 0.73913 0.00000262

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-673-5p 0.555556 0.0000528

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