PITA_152 megaCluster: 3 Residual: 0.24 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_152	3	0.24	15	0	0.88411	0

Members

Displaying 1 - 35 of 35

15162 hemopoietic cell kinase Details for - - hemopoietic cell kinase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15162 Tuberculist Genomic Region	21416 transcription factor 7 like 2, T cell specific, HMG box Details for - - transcription factor 7 like 2, T cell specific, HMG box GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21416 Tuberculist Genomic Region
23960 2'-5' oligoadenylate synthetase 1G Details for - - 2'-5' oligoadenylate synthetase 1G GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 23960 Tuberculist Genomic Region	270084 lysophosphatidylcholine acyltransferase 2 Details for - - lysophosphatidylcholine acyltransferase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 270084 Tuberculist Genomic Region
72027 solute carrier family 39 (zinc transporter), member 4 Details for - - solute carrier family 39 (zinc transporter), member 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72027 Tuberculist Genomic Region	100038548 predicted gene 10521 Details for - - predicted gene 10521 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100038548 Tuberculist Genomic Region
100503626 predicted gene, 19803 Details for - - predicted gene, 19803 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100503626 Tuberculist Genomic Region	13051 predicted gene, 19955 Details for - - predicted gene, 19955 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100503907 Tuberculist Genomic Region
14130 chemokine (C-X3-C motif) receptor 1 Details for - - chemokine (C-X3-C motif) receptor 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13051 Tuberculist Genomic Region	170758 Fc receptor, IgG, low affinity IIb Details for - - Fc receptor, IgG, low affinity IIb GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14130 Tuberculist Genomic Region
17096 RAS-related C3 botulinum substrate 3 Details for RP23-84C12.18-001 - RAS-related C3 botulinum substrate 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 170758 Tuberculist Genomic Region	17390 Yamaguchi sarcoma viral (v-yes-1) oncogene homolog Details for RP23-49A12.2 - Yamaguchi sarcoma viral (v-yes-1) oncogene homolog GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17096 Tuberculist Genomic Region
17395 matrix metallopeptidase 2 Details for - - matrix metallopeptidase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17390 Tuberculist Genomic Region	19252 matrix metallopeptidase 9 Details for RP23-61O3.10-001 - matrix metallopeptidase 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17395 Tuberculist Genomic Region
195522 dual specificity phosphatase 1 Details for - - dual specificity phosphatase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19252 Tuberculist Genomic Region	19697 zinc finger protein 691 Details for RP23-344D2.5 - zinc finger protein 691 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 195522 Tuberculist Genomic Region
216080 v-rel reticuloendotheliosis viral oncogene homolog A (avian) Details for - - v-rel reticuloendotheliosis viral oncogene homolog A (avian) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19697 Tuberculist Genomic Region	21934 ubiquitin-conjugating enzyme E2D 1 Details for - - ubiquitin-conjugating enzyme E2D 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216080 Tuberculist Genomic Region
22436 tumor necrosis factor receptor superfamily, member 11a Details for - - tumor necrosis factor receptor superfamily, member 11a GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21934 Tuberculist Genomic Region	240921 xanthine dehydrogenase Details for - - xanthine dehydrogenase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22436 Tuberculist Genomic Region
24110 predicted gene 4955 Details for - - predicted gene 4955 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 240921 Tuberculist Genomic Region	26360 ubiquitin specific peptidase 18 Details for - - ubiquitin specific peptidase 18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 24110 Tuberculist Genomic Region
328830 angiopoietin-like 2 Details for RP23-35J6.3 - angiopoietin-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26360 Tuberculist Genomic Region	56209 RIKEN cDNA A530064D06 gene Details for - - RIKEN cDNA A530064D06 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 328830 Tuberculist Genomic Region
64381 glycerophosphodiester phosphodiesterase 1 Details for - - glycerophosphodiester phosphodiesterase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56209 Tuberculist Genomic Region	67399 membrane-spanning 4-domains, subfamily A, member 8A Details for - - membrane-spanning 4-domains, subfamily A, member 8A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 64381 Tuberculist Genomic Region
68742 PDZ and LIM domain 7 Details for RP23-211O9.2 - PDZ and LIM domain 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67399 Tuberculist Genomic Region	74440 transmembrane protein 219 Details for - - transmembrane protein 219 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68742 Tuberculist Genomic Region
14726 c-Maf inducing protein Details for - - c-Maf inducing protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74440 Tuberculist Genomic Region	209200 podoplanin Details for RP23-348F1.2 - podoplanin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14726 Tuberculist Genomic Region
231655 deltex 3-like (Drosophila) Details for - - deltex 3-like (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 209200 Tuberculist Genomic Region	57444 2'-5' oligoadenylate synthetase-like 1 Details for - - 2'-5' oligoadenylate synthetase-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231655 Tuberculist Genomic Region
216991 interferon-stimulated protein Details for - - interferon-stimulated protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 57444 Tuberculist Genomic Region	18036 ArfGAP with dual PH domains 2 Details for RP23-7J19.2 - ArfGAP with dual PH domains 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216991 Tuberculist Genomic Region
Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18036 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_IRF_Q6_01_M00972	0.419355	0.00000118

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
120	AAANTGAAANTN	STAT1_MA0137.1, IRF1_MA0050.1, IRF2_MA0051.1, V$IRF1_Q6_01_M01881, V$ICSBP_Q6_M00699, V$ISRE_01_M00258, V$IRF_Q6_M00772, V$IRF2_Q6_M01882, V$IRF_Q6_01_M00972, V$IRF1_01_M00062, V$IRF2_01_M00063, V$IRF8_Q6_M01665, V$IRF1_Q6_M00747, V$ISGF3G_03_M02771, V$IRF4_Q6_M01883, V$SPIB_01_M01204, V$IRF7_01_M00453, V$IRF3_05_M02767, IRF7_IRF_DBD_dimeric_14_1, IRF8_IRF_full_dimeric_14_1, IRF4_IRF_full_dimeric_15_1, PRDM1_C2H2_full_monomeric-or-dimeric_15_1, IRF9_IRF_full_trimeric_15_1, IRF3_IRF_full_trimeric_21_1	7100	TAAAACATTTT	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
0.97	TCGGGG	Zfp740.2, Zbtb7b.1	1.05	CGGGCACT	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.55	CCCNAC	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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