PITA_193 megaCluster: 3 Residual: 0.20

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_193 3 0.20 13 0 0.853987 0

Members

Displaying 1 - 45 of 45
140795 purinergic receptor P2Y, G-protein coupled, 14

Details for - - purinergic receptor P2Y, G-protein coupled, 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140795

Tuberculist Genomic Region

16542 kinase insert domain protein receptor

Details for - - kinase insert domain protein receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16542

Tuberculist Genomic Region

170736 parvin, beta

Details for - - parvin, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170736

Tuberculist Genomic Region

17130 SMAD family member 6

Details for - - SMAD family member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17130

Tuberculist Genomic Region

235330 tetratricopeptide repeat domain 12

Details for - - tetratricopeptide repeat domain 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235330

Tuberculist Genomic Region

545384 cDNA sequence BC094916

Details for - - cDNA sequence BC094916

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 545384

Tuberculist Genomic Region

101985 U6 snRNA biogenesis 1

Details for - - U6 snRNA biogenesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101985

Tuberculist Genomic Region

107350 expressed sequence AW112010

Details for - - expressed sequence AW112010

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107350

Tuberculist Genomic Region

12870 ceruloplasmin

Details for - - ceruloplasmin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12870

Tuberculist Genomic Region

13011 cystatin F (leukocystatin)

Details for RP23-156P22.1 - cystatin F (leukocystatin)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13011

Tuberculist Genomic Region

14538 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme

Details for - - glucosaminyl (N-acetyl) transferase 2, I-branching enzyme

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14538

Tuberculist Genomic Region

15439 haptoglobin

Details for - - haptoglobin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15439

Tuberculist Genomic Region

16497 potassium voltage-gated channel, shaker-related subfamily, beta member 1

Details for - - potassium voltage-gated channel, shaker-related subfamily, beta member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16497

Tuberculist Genomic Region

17329 chemokine (C-X-C motif) ligand 9

Details for - - chemokine (C-X-C motif) ligand 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17329

Tuberculist Genomic Region

17472 guanylate binding protein 4

Details for - - guanylate binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17472

Tuberculist Genomic Region

17940 NLR family, apoptosis inhibitory protein 1

Details for - - NLR family, apoptosis inhibitory protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17940

Tuberculist Genomic Region

20540 solute carrier family 7 (cationic amino acid transporter, y+ system), member 7

Details for - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20540

Tuberculist Genomic Region

20723 serine (or cysteine) peptidase inhibitor, clade B, member 9

Details for RP23-391I11.1 - serine (or cysteine) peptidase inhibitor, clade B, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20723

Tuberculist Genomic Region

20846 signal transducer and activator of transcription 1

Details for - - signal transducer and activator of transcription 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20846

Tuberculist Genomic Region

209488 hematopoietic SH2 domain containing

Details for - - hematopoietic SH2 domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209488

Tuberculist Genomic Region

213233 TAP binding protein-like

Details for - - TAP binding protein-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213233

Tuberculist Genomic Region

21897 toll-like receptor 1

Details for - - toll-like receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21897

Tuberculist Genomic Region

230157 transmembrane protein with EGF-like and two follistatin-like domains 1

Details for RP23-141C15.2 - transmembrane protein with EGF-like and two follistatin-like domains 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230157

Tuberculist Genomic Region

236573 guanylate-binding protein 9

Details for - - guanylate-binding protein 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236573

Tuberculist Genomic Region

244183 tripartite motif-containing 30B

Details for - - tripartite motif-containing 30B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244183

Tuberculist Genomic Region

29863 phosphodiesterase 7B

Details for - - phosphodiesterase 7B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29863

Tuberculist Genomic Region

432555 predicted gene 5431

Details for RP23-14F5.8 - predicted gene 5431

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 432555

Tuberculist Genomic Region

50934 solute carrier family 7 (cationic amino acid transporter, y+ system), member 8

Details for - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50934

Tuberculist Genomic Region

56055 GTP binding protein 2

Details for - - GTP binding protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56055

Tuberculist Genomic Region

59045 START domain containing 3

Details for RP23-355L10.4 - START domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 59045

Tuberculist Genomic Region

631323 predicted gene 12250

Details for - - predicted gene 12250

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 631323

Tuberculist Genomic Region

66307 isochorismatase domain containing 1

Details for - - isochorismatase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66307

Tuberculist Genomic Region

666926 predicted gene 8369

Details for - - predicted gene 8369

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 666926

Tuberculist Genomic Region

69721 NFKB inhibitor interacting Ras-like protein 1

Details for RP23-205G15.2 - NFKB inhibitor interacting Ras-like protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69721

Tuberculist Genomic Region

108670 epithelial stromal interaction 1 (breast)

Details for - - epithelial stromal interaction 1 (breast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108670

Tuberculist Genomic Region

121021 chondroitin sulfate proteoglycan 4

Details for - - chondroitin sulfate proteoglycan 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 121021

Tuberculist Genomic Region

15958 interferon-induced protein with tetratricopeptide repeats 2

Details for - - interferon-induced protein with tetratricopeptide repeats 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15958

Tuberculist Genomic Region

17948 NLR family, apoptosis inhibitory protein 2

Details for RP23-333E24.2 - NLR family, apoptosis inhibitory protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17948

Tuberculist Genomic Region

22169 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial

Details for - - cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22169

Tuberculist Genomic Region

320148 RIKEN cDNA B430306N03 gene

Details for - - RIKEN cDNA B430306N03 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320148

Tuberculist Genomic Region

327978 schlafen 5

Details for RP23-392I13.5 - schlafen 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327978

Tuberculist Genomic Region

60440 interferon inducible GTPase 1

Details for - - interferon inducible GTPase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60440

Tuberculist Genomic Region

12494 CD38 antigen

Details for - - CD38 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12494

Tuberculist Genomic Region

22695 zinc finger protein 36

Details for - - zinc finger protein 36

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22695

Tuberculist Genomic Region

56066 chemokine (C-X-C motif) ligand 11

Details for - - chemokine (C-X-C motif) ligand 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56066

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Isgf3g.1 0.295455 0.0000000000648

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
7e-17 AAAGANAAGAAA NA 0.000078 TTTTYTAAAAAW NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.47 CGAGCT NA 0.51 GCACGTCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.25 TATACG NA NA 0.39 CATCACNC NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-877 0.72973 0.000054

3p UTR TargetScan

miRNAs percTargets pValue
NA

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