PITA_195 megaCluster: 3 Residual: 0.24

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_195 3 0.24 9 0.021 0.733279 0.3

Members

Displaying 1 - 29 of 29
16948 lysyl oxidase

Details for - - lysyl oxidase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16948

Tuberculist Genomic Region

209446 transcription factor E3

Details for RP23-109E24.7 - transcription factor E3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209446

Tuberculist Genomic Region

54711 pleiomorphic adenoma gene-like 2

Details for RP23-192G18.4 - pleiomorphic adenoma gene-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54711

Tuberculist Genomic Region

108078 oxidized low density lipoprotein (lectin-like) receptor 1

Details for - - oxidized low density lipoprotein (lectin-like) receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108078

Tuberculist Genomic Region

11433 acid phosphatase 5, tartrate resistant

Details for - - acid phosphatase 5, tartrate resistant

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11433

Tuberculist Genomic Region

11910 activating transcription factor 3

Details for - - activating transcription factor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11910

Tuberculist Genomic Region

12389 caveolin 1, caveolae protein

Details for - - caveolin 1, caveolae protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12389

Tuberculist Genomic Region

12394 runt related transcription factor 1

Details for - - runt related transcription factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12394

Tuberculist Genomic Region

13822 erythrocyte protein band 4.1-like 2

Details for - - erythrocyte protein band 4.1-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13822

Tuberculist Genomic Region

17112 transmembrane 4 superfamily member 1

Details for - - transmembrane 4 superfamily member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17112

Tuberculist Genomic Region

18033 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105

Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18033

Tuberculist Genomic Region

19201 proline-serine-threonine phosphatase-interacting protein 2

Details for - - proline-serine-threonine phosphatase-interacting protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19201

Tuberculist Genomic Region

213811 cDNA sequence BC002059

Details for - - cDNA sequence BC002059

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213811

Tuberculist Genomic Region

21923 tenascin C

Details for RP24-144L11.1 - tenascin C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21923

Tuberculist Genomic Region

22165 TXK tyrosine kinase

Details for - - TXK tyrosine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22165

Tuberculist Genomic Region

22290 ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome

Details for - - ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22290

Tuberculist Genomic Region

234577 copine II

Details for - - copine II

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234577

Tuberculist Genomic Region

23880 FYN binding protein

Details for - - FYN binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23880

Tuberculist Genomic Region

26921 mitogen-activated protein kinase kinase kinase kinase 4

Details for - - mitogen-activated protein kinase kinase kinase kinase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26921

Tuberculist Genomic Region

433956 HEAT repeat containing 2

Details for - - HEAT repeat containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 433956

Tuberculist Genomic Region

503610 zinc finger, DHHC domain containing 18

Details for RP23-137L22.12-001 - zinc finger, DHHC domain containing 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 503610

Tuberculist Genomic Region

54383 polyhomeotic-like 2 (Drosophila)

Details for RP23-467J23.1 - polyhomeotic-like 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54383

Tuberculist Genomic Region

56212 ras homolog gene family, member G

Details for - - ras homolog gene family, member G

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56212

Tuberculist Genomic Region

57349 pro-platelet basic protein

Details for - - pro-platelet basic protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57349

Tuberculist Genomic Region

668139 predicted gene 8995

Details for - - predicted gene 8995

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 668139

Tuberculist Genomic Region

68724 ADP-ribosylation factor-like 8A

Details for - - ADP-ribosylation factor-like 8A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68724

Tuberculist Genomic Region

69188 lysine (K)-specific methyltransferase 2E

Details for - - lysine (K)-specific methyltransferase 2E

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69188

Tuberculist Genomic Region

72054 cytochrome P450, family 4, subfamily f, polypeptide 18

Details for - - cytochrome P450, family 4, subfamily f, polypeptide 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72054

Tuberculist Genomic Region

74646 splA/ryanodine receptor domain and SOCS box containing 1

Details for RP23-169H13.1 - splA/ryanodine receptor domain and SOCS box containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74646

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ZFP410_04_M02936, Zfp410.1, V_ZFP281_01_M01597, V_SP1_Q2_01_M00933 1, 1, 1, 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000067 AAAAARAAAAAY NA 490 KTATTTTATNTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.9 CTCCGC NA 1.1 CCCTCCGC SP1_MA0079.2, V$MAZ_Q6_01_M02023, V$ETF_Q6_M00695, V$SP1_03_M02281, V$MAZ_Q6_M00649, V$SPZ1_01_M00446, V$ZFP281_01_M01597, Zfp740.2, Bcl6b.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.73 TCGCGTCG NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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