PITA_215 megaCluster: 3 Residual: 0.17

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_215 3 0.17 15 0 0.943108 0

Members

Displaying 1 - 29 of 29
109754 cytochrome b5 reductase 3

Details for - - cytochrome b5 reductase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109754

Tuberculist Genomic Region

12051 B cell leukemia/lymphoma 3

Details for - - B cell leukemia/lymphoma 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12051

Tuberculist Genomic Region

12153 bone morphogenetic protein 1

Details for - - bone morphogenetic protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12153

Tuberculist Genomic Region

13424 dynein cytoplasmic 1 heavy chain 1

Details for - - dynein cytoplasmic 1 heavy chain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13424

Tuberculist Genomic Region

14747 chemokine-like receptor 1

Details for - - chemokine-like receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14747

Tuberculist Genomic Region

16323 inhibin beta-A

Details for - - inhibin beta-A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16323

Tuberculist Genomic Region

16543 MyoD family inhibitor domain containing

Details for - - MyoD family inhibitor domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16543

Tuberculist Genomic Region

16948 lysyl oxidase

Details for - - lysyl oxidase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16948

Tuberculist Genomic Region

170744 toll-like receptor 8

Details for RP23-139P21.2 - toll-like receptor 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170744

Tuberculist Genomic Region

19204 platelet-activating factor receptor

Details for RP23-470B20.1 - platelet-activating factor receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19204

Tuberculist Genomic Region

20354 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

Details for - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20354

Tuberculist Genomic Region

209446 transcription factor E3

Details for RP23-109E24.7 - transcription factor E3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209446

Tuberculist Genomic Region

212167 gamma-secretase activating protein

Details for - - gamma-secretase activating protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212167

Tuberculist Genomic Region

21825 thrombospondin 1

Details for RP23-234E8.1 - thrombospondin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21825

Tuberculist Genomic Region

21859 tissue inhibitor of metalloproteinase 3

Details for - - tissue inhibitor of metalloproteinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21859

Tuberculist Genomic Region

22680 zinc finger protein 207

Details for RP23-252E4.3 - zinc finger protein 207

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22680

Tuberculist Genomic Region

228543 ras homolog gene family, member V

Details for RP23-46P4.4 - ras homolog gene family, member V

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228543

Tuberculist Genomic Region

240328 RIKEN cDNA F830016B08 gene

Details for - - RIKEN cDNA F830016B08 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240328

Tuberculist Genomic Region

53376 fibronectin leucine rich transmembrane protein 2

Details for - - fibronectin leucine rich transmembrane protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 399558

Tuberculist Genomic Region

72027 ubiquitin specific peptidase 2

Details for MNCb-0190 - ubiquitin specific peptidase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53376

Tuberculist Genomic Region

72472 solute carrier family 39 (zinc transporter), member 4

Details for - - solute carrier family 39 (zinc transporter), member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72027

Tuberculist Genomic Region

75345 solute carrier family 16 (monocarboxylic acid transporters), member 10

Details for - - solute carrier family 16 (monocarboxylic acid transporters), member 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72472

Tuberculist Genomic Region

98999 SLAM family member 7

Details for - - SLAM family member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75345

Tuberculist Genomic Region

230073 zinc finger, NFX1-type containing 1

Details for RP23-19L12.5 - zinc finger, NFX1-type containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98999

Tuberculist Genomic Region

623121 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

Details for RP23-9F23.2 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230073

Tuberculist Genomic Region

114644 pyrin domain containing 4

Details for - - pyrin domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 623121

Tuberculist Genomic Region

21923 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3

Details for RP23-395E18.3 - solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114644

Tuberculist Genomic Region

54383 tenascin C

Details for RP24-144L11.1 - tenascin C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21923

Tuberculist Genomic Region

Details for RP23-467J23.1 - polyhomeotic-like 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54383

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_NF1_Q6_M00193 0.62069 0.0000493

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000001 AAANANAAAAAA NA 1300 TTGACATTTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.79 CGCGCT E2F2.1, E2F3.1, Zfp161.1, Zfp161.2 0.99 AGAGGCGG Bcl6b.2, Zfp410.1

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.56 NGACTC NA NA 0.68 GTCCTAGC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-149 0.56 0.0000143

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